Array 1 23446-22156 **** Predicted by CRISPRDetect 2.4 *** >NZ_APSP01000105.1 Neisseria meningitidis 63023 gnm63023.contig.104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23445 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 23379 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 23313 36 100.0 30 .................................... CTGACCACACCTATCCGCCAGTGCTTATGC 23247 36 100.0 30 .................................... AAGCCGGTTTATGGCAATTCTGCCGCGTCC 23181 36 100.0 30 .................................... ATGCCTTTTTTTGTACTGTTGTTTGAACGA 23115 36 100.0 30 .................................... AAATTCGTTTCAGATAGCAAACGCAGTAGT 23049 36 100.0 30 .................................... GCCGGATATGACGGTGGGCAACTGGTACAG 22983 36 100.0 30 .................................... ATTTCGCTTTTGTATTGATTCAAGGTGCTT 22917 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 22851 36 100.0 30 .................................... GGGTAGCCAGTGCTAAAACCGCACCCGCTT 22785 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 22719 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 22653 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 22587 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 22521 36 100.0 30 .................................... TGTTATCCCCGGAGTACCTTTTATCCGTTG 22455 36 100.0 30 .................................... CCGGTTTGCCGGCTTTTGCGTGTTCGGTTT 22389 36 100.0 30 .................................... TTGCGCATGATGGCAACGATAATTACCATC 22323 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 22257 36 100.0 30 .................................... TCATACCCAAATCATCGGCATCCTGTTGGT 22191 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //