Array 1 25872-26425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAUB01000029.1 Streptococcus equi subsp. zooepidemicus Sz35 contig000006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================= ================== 25872 26 100.0 40 .......................... CTAAAGAGGTGAACGAATGAATAAAAGCGAAATCGTCTCG 25938 26 100.0 40 .......................... CGCACTGTCAAAAGTATTGAGAGAAGAGGTGACGGTCTCG 26004 26 100.0 40 .......................... TGTAGTCACATAATCAAAGTAACCATAGTTTATCGTCTCG 26070 26 100.0 40 .......................... AAATAAACTGTGCGCCTGTTCCAAACGTTTGTATGTCTCG 26136 26 100.0 39 .......................... ATCTAAAACTACACTGCCATGTCTAATCTCTAAGTCTCG 26201 26 100.0 41 .......................... TATACAGTTGTCATGTTCTTTTACTTCATAGCCTAGTCTCG 26268 26 100.0 41 .......................... TGGTGTATGAGTGGTGACTTTATTAGACTTCACAGGTCTCG 26335 26 100.0 39 .......................... ATTTTTTCCATCATACACATCAATTTTACTAACGTCTCG 26400 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ========================================= ================== 9 26 100.0 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : TATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACGGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGGGTCACTCATAAAATGCTGTGAGACTCGCGCTAAAATAAGCTAAAAAATAGAGAAATGGGAGGTTATAGCTAAATATGTTATTAGCTAGCCTGTATCATTTCTCTATAAACTGTGCTATACTGCGCAGTCTCG # Right flank : ATACTTATCAAATGTTACACTATCAATATATGCGGGTCTCGCCCCATACGGGCGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1468-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAUB01000125.1 Streptococcus equi subsp. zooepidemicus Sz35 contig000088, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1467 32 84.4 35 ........CCAT.C.................. GTCAAAAAGGCCGCTTAAATCGCTTGTCTGATACC 1400 32 84.4 34 ........CCAT.C.................. ATCAAAAGGCTGCTCATAAGGTGCAAGATAGTAA 1334 32 100.0 35 ................................ AACAGGTGTTAAGTTTGTAGTAATGATTGTATTTG 1267 32 100.0 34 ................................ GTTTAAAATATCAGCAACTGCCTCGACTGTCACC 1201 32 100.0 33 ................................ CCTGGTGGTCAGCCTGCATTACTGGGCTTGTCT 1136 32 100.0 33 ................................ AGGATCGCAAACGATAATATCATCATTAGTACG 1071 32 100.0 33 ................................ AGAAAAATCTATTGAATATCGAATAGCAAACAA 1006 32 100.0 35 ................................ AATAACCTTTAAGGCTACATTAAACATCTCATGAA 939 32 100.0 34 ................................ CAGTCATGGACGTTGAAAGAAGTGTTGCTAGTCA 873 32 100.0 34 ................................ TTCCTGATATGCCAAAAGGTACTAAGGTCTTACG 807 32 100.0 34 ................................ GTTATGCTAGGTATCTGATTGAGTCAGAAGATGA 741 32 100.0 34 ................................ GGTTGTGGTTATTTTAGCTAATAGCTCTGCTGAC 675 32 100.0 35 ................................ AATAATTTCTTTAAAGCCGTCGGCAATCAGCTGAA 608 32 100.0 33 ................................ TATCAGAAAGGAGAAAATATGCTTTATGACAAA 543 32 100.0 33 ................................ ACTGACAGTTGCATGATTAACAGTAGCTGTTGT 478 32 100.0 35 ................................ ATCTCTCTTCCCTCTCTCTTAACTTAATAAGTTTG 411 32 100.0 33 ................................ TATCAAAAGTCAGTCTAGACGAATTTAAATAAC 346 32 100.0 33 ................................ GTGTATCGCAGACATGCATTGCCTTGCGTTTCG 281 32 100.0 34 ................................ ATCCTTGTAATCATCGACATAGATAAAGCCTTTC 215 32 100.0 33 ................................ TAAAAATTTTGTCTCTGTCTCCTCGATAGATCT 150 32 100.0 36 ................................ TAATATCCAAACTCCCCACAACCGAGACAGTTTGTC 82 32 87.5 0 ........C..TGC.................. | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 98.0 34 GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT # Left flank : GATTGAAATAAAAAGCATGATACTCATTGGAAAAATCAAGACAA # Right flank : TTGCGAGATTAACTTACTGCACATGGATTTTATCGTCTCGCCCTTTGCGGG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA //