Array 1 183197-181866 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKO01000004.1 Listeria monocytogenes strain FSL L7-0145 NODE_4_length_475887_cov_35.381881, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 183196 29 100.0 36 ............................. GACACGCCTTTCCCATTTTGTCGGTAAGATATTTCA 183131 29 100.0 36 ............................. TTAGAAGATAAAAATTTCCACGTGGACGCACATTCG 183066 29 100.0 36 ............................. ATAACCATGATAGCATCAAAGCCCGAAGAGGTAAGT 183001 29 100.0 35 ............................. TAGACGAGTAGGCGCATAATTGTTACATTACCACC 182937 29 100.0 37 ............................. ATGAACCGCAAGACCAACCAAATAGCGGAGTTAGAAG 182871 29 100.0 34 ............................. TTTGATACAGCGTTTTTAAGTAAAATGAGTATTC 182808 29 100.0 38 ............................. GTTTTTACCTGTTTTGGTGTTATAGATTGGCAAGTTGC 182741 29 100.0 35 ............................. TATTTTATACAATCTCCTTCACGTAACGAATTTCT 182677 29 100.0 36 ............................. TTTGAAATCGTTGTGGACGGAATAAAAGAAAAAGAT 182612 29 100.0 36 ............................. ATTGTTGCGGTTATCGATGGATTTACGGAAGCTATG 182547 29 100.0 36 ............................. GAAGATTTCGATACAAGATTCTACTTTGATGCTAGC 182482 29 100.0 37 ............................. AGTTATTCCTTTTAACAGAAATGCGTGGCACTGTGGT 182416 29 100.0 36 ............................. AGCGTTTTGATAAGCTTTTCTTTGATGGTGTTAAAC 182351 29 100.0 37 ............................. GAATGCCTCGTTTTACGTACTATGTAGAAAAAGACCC 182285 29 100.0 37 ............................. TTTAATGCGTCAGGTAAACGCTTTTTTCGACACTCTT 182219 29 100.0 34 ............................. AATTTCTAATCCTAAATTATCCTTATTTTCCTCA 182156 29 100.0 34 ............................. TCGCTAACATTTCAGCCCACTCATCAGCCTCAGC 182093 29 100.0 37 ............................. CTCGCTCTAGCAATTGCTCATCAAAAATATAACTCCA 182027 29 100.0 36 ............................. TTCAGTAACATGTTCGCTGTAATCACGAATCTGAAA 181962 29 100.0 38 ............................. AAGTCCGAGCGTTTTCGCTAACGCAGCTGATACATCCG 181895 29 93.1 0 .......................C....C | A [181870] ========== ====== ====== ====== ============================= ====================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAATAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 201352-200026 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKO01000004.1 Listeria monocytogenes strain FSL L7-0145 NODE_4_length_475887_cov_35.381881, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 201351 29 100.0 36 ............................. AGCGAACAGTGTAGATAATTACAAATTAGCAGAGCA 201286 29 100.0 36 ............................. ATACTTATTATGATCATAGACTAGCAACTCCGACCC 201221 29 100.0 36 ............................. AAGGCCTAATGCAAACGGGTTTTGTGTACCATAATC 201156 29 100.0 36 ............................. TAATCTACACCTTTGTGGAATTCGGATTTCCCGAAA 201091 29 100.0 35 ............................. ACCAATCTCTTGCTTCACTTTCAATTTTTGCTTTA 201027 29 100.0 36 ............................. TCTGATACTTTACCTTTGTCCTCTAATGATTGTATT 200962 29 100.0 37 ............................. GTAGTTTGTGACCGTTTAAAAACATAATTTGAAAAAC 200896 29 96.6 36 ..........C.................. TTACCCGTTTCATCATTTCCAAGCGTTGCATCAATG 200831 29 93.1 37 ..........C...A.............. TCTGTATAATAAGAAGTACGTTTTGCGACTGGTGCCA 200765 29 93.1 36 ..........C.......A.......... AAAACAACTAAAAGACCGCCTACTATTTATACTCCT 200700 29 93.1 36 ..........C.......A.......... TTTAACGTTGGCCCAACATTTTTATCTGAGAAGGGG 200635 29 93.1 35 ..........C.......A.......... TCTTTTAACCTAGCTCTTATCAATGTTTGAGTAAC 200571 29 86.2 36 A.........C...AC............. GATTTAAAGTTAGATATAAATAATGTGATTTTAGTT 200506 29 96.6 35 ..........A.................. ATTTACGCAAGAACTGGAACTATTAAAGCCGCTAT 200442 29 93.1 36 .........GC.................. AAAGGTAATACGAATTTATCTGTTAGTTGAAAAATC 200377 29 93.1 34 ..........C...A.............. GTGTACTCTAATGCCAAATTTAATTCCTCCTATT 200314 29 93.1 36 ..........C...A.............. TCGACATAACACATATATTTAAAATCATTAAAACTA 200249 29 96.6 36 ..........A.................. AATTGTTTGGCTAAAGCGTCAGAATAAGATGTTGTG 200184 29 93.1 36 ..........C...A.............. AAGGCAGTTAAGTAAGCAGCGACAGGGAACGGAAAT 200119 29 93.1 36 ..........C...A.............. GGAATCACGGACAGTCAGGCGAAGATAACTAAACTG 200054 29 75.9 0 T.....A...C....CA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 21 29 94.8 36 GTTTTAGTTATTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCATAGAAGTTATCGCTTGCGCAACCCACTCTGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAATAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGTTGGAGGAAGGGAAGTTTGACGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAACTCCACCACCATCCATCAAAATCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTATTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //