Array 1 144135-144895 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODT01000007.1 Pectobacterium carotovorum subsp. carotovorum ICMP 5702 C07_001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 144135 29 100.0 32 ............................. CACCACGACATGGCGTATCGCGCGGATGGTGC 144196 29 100.0 32 ............................. GGAGCCACCGACAGACAGGTTGTCCGGCAGAC 144257 29 100.0 32 ............................. CCGCTCCAGTTCTGGCCAGCATTCAACATCGC 144318 29 100.0 32 ............................. AACTAGCGGGAATCATCAAACTACAAGCAAAA 144379 29 100.0 32 ............................. TAGCCGCTACCGGCGTATGAACAGGTAGATGA 144440 29 100.0 32 ............................. GCGTATGAGGGACAGATTTCGACCACTGATGT 144501 29 100.0 32 ............................. CGCTCTCTGTTCCGGCTGTGGTTATTTCTGAT 144562 29 100.0 32 ............................. TCCATCCACTTTTCGTTAATCAGCGGCTGTTC 144623 29 100.0 32 ............................. CCACTGGTAACGATTCCGTTATCGCATCATCA 144684 29 100.0 32 ............................. GAATGGGTTACGCCTTTGCAAGTTCGCCGTTC 144745 29 100.0 32 ............................. GTGGTTCTAATAAATTACAGGGACTTGTAGGA 144806 29 100.0 32 ............................. AGGAAATTGATGGAAACACTATTTGCGCTGGT 144867 29 89.7 0 ..A..........T..............C | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGATGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTACTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCAGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAATCGCTAAAGAATTAGCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAGGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATGTGAATACTCACTACTTCATGAGGAATGGAGACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCATCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAACATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 147659-148237 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODT01000007.1 Pectobacterium carotovorum subsp. carotovorum ICMP 5702 C07_001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 147659 29 100.0 32 ............................. CATATGAATCCCTACGAGATATAGCGTAATCC 147720 29 100.0 32 ............................. GCACCGGCATCACCAGTCTGCCGGACAACCTG 147781 29 96.6 33 ............................A GGGACATAAGCGTACCTGCGCTCAAACACTTAG 147843 29 100.0 32 ............................. GCAGTAGCGATACATTCAGGTAAATCAAGCAA 147904 29 100.0 32 ............................. GACAAAGTAGCCAAAACCGTGCCAGTGAATAC 147965 29 100.0 32 ............................. AAGAAGTAAAAGATAAAACCCCTATCTCTAGC 148026 29 86.2 32 .......TT....A..T............ TTCGCTGCGTTCATTATGGACCAAGACACACC 148087 29 100.0 32 ............................. AAGTTCAGAATGGACGTCTCTGGGTGGCTGAT 148148 29 96.6 32 .............T............... GGGAGAACATTGCCACCGGGTATTCCGCCGGA 148209 29 93.1 0 .............T.............T. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTCCTGCTAATTATTTACTGCGTTACTTCAAGACGATGGATATGCATTGATTACTTCCAATTTATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAATATTTTTAACAGGGAAATTTTTACCGAGAAATAGAAATAAAAGCGCAGTGGTATAGCTCTTGCAGCAGTGTGCAGCGTTTAATTCAGCAACTGAACGTTTTCCGGATGTATGAAATCAAACTGGCAGAACAGGGAAACGTGGTGATAGCGTGGGCGAAAAACACGGAATCTGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGGAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GGGCTTATACCCCTTGTTTCATGTTGGTCTAAATATCCCCTGCACGGTTCAAATCCAGCCTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACTCACCGTAATGGTGACGCGCTATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCCGAACTGTATGAAACGGTTGAAGGCCTTGTTAGCAGTGGGCGGTTGGGACGTGAAGAAGGGTCTGCGCTGCTGGGTTTTGTCTCGTCACCGAGAGCCGAAGGGGGAAGTATTCCACCTTCCAATGTGTTCCAGCCAATT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 173758-174747 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODT01000017.1 Pectobacterium carotovorum subsp. carotovorum ICMP 5702 C17_001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================= ================== 173758 28 92.9 32 T............C.............. GCAATATTGTTGACGTAACGCATAATCAGCGT TA,G [173761,173764] 173821 28 96.4 32 .............C.............. GCAATATTGTTGACGTAACGCATAATCAGCGT 173881 28 96.4 32 .............C.............. GCCATCGAACGCGTTATCACAAGCCTCGCCGC 173941 28 100.0 32 ............................ TGATAACCCTGAGTGAATTACTCGAGTCAAAC 174001 28 85.7 32 ..G........T.....TC......... ACACCAGTTTTTAGGTTGAGTTAATCCCTCGA 174061 28 96.4 32 .............C.............. TGGTAAAAGCGATGAATGCATTCAACATCACC 174121 28 96.4 32 ...........G................ TGGTAAAAGCGATGAATGCATTCAACATCACC 174181 28 96.4 32 ...........G................ GTATGAAGCGACGTTCAAAGACATGCCTCATT 174241 28 75.0 89 ..C.................TGA.C.TC CAGATGCTGCTATCGATTAACGGTTATCATTTCTAAGCTGCCTGTGCGACAGTGAACCACTGCATGATTGGTTTTTGCATAACGTTCGT 174358 28 96.4 32 T........................... CATGCTGCCGATCGCAACGCGTGGCCACTCAT TA,G [174361,174364] 174421 28 100.0 32 ............................ CCCGTCGCGCAAGTTACGCAGAAATTGAAGTG 174481 28 100.0 32 ............................ ACAAGAAAAAGGCGCTGGGCCGCGCCTATTGG 174541 28 100.0 32 ............................ GGTTACGCTATCCGGCGTAGCTTCACTGCTCC 174601 28 89.3 32 .......A.T.T................ TGTCACGACGAAATAGACCGCAGAACGCGACA 174661 28 92.9 32 .C.........T................ TATTCCTGTTTGTTTATAGTGATTACACTCTT 174721 27 75.0 0 ...A...A...TGC.......-....T. | ========== ====== ====== ====== ============================ ========================================================================================= ================== 16 28 93.1 36 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AACGCCTTTAAAAAATACGTCGCTTCCTGCACAGTCAATATGGCATGAATGTTATCGTTATTTATTTCATTTAGTTGAGCATGTAATTTCTGATAGTTAATATCTGCATGCTGCTTTTTAAAATCAAGATGGTCCTCTAACCGATAGTCATCATCTACAAGCGTTTTTAAAACGGGATCGTATTTCACAGTCACTCACTCCCTTGAATTTGACTTAAATCAACGCACTATTTCCCTGTAAGGGCACTTTAACGGAAAAATGATGATTTTTAAATGTTAATAATGCCCAACCCGTAATTTTTCATTCCCTCGAAAAGAAACTCATTACTTAAAAACGTTACGAAAGAAGGCCATCAATATGCGTTATTTAACGGGGTAAACGCATTGAGCACTTGGCGCAGCGCTACTTCGATAATAGCCAGACAATAGCGCTTGAGGCCGTGGATAAACTGCCTATGCGGCAGTGAACCTGCTGGACGAAACATTCTCGATATCAGAGCC # Right flank : ACTTATCAGAATGCGTCGCTGGCGCGACGCATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCATTGGTGATGGGGATCGTCAGGCTGTTTCCGAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACTAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCAGCATTTTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAACACCTGCATCAGCCCGACTTTTATCTGGCGCAGTGCGATAACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGAGTCCCCTGCTATCAGGCTTCACGCGCCAGAATCGG # Questionable array : NO Score: 5.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.31, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //