Array 1 406153-406852 **** Predicted by CRISPRDetect 2.4 *** >NC_013592.1 Dickeya parazeae Ech586, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 406153 29 100.0 32 ............................. GCTAATCCCCTCTTTCTGAAGGTTGAAGATGT 406214 29 100.0 32 ............................. ATGAAACCTGGTTTCTACTGCGTTGTCGTGAA 406275 29 100.0 32 ............................. GCTTTTTCAGCCGCAGAATTTACCGCGACCTC 406336 29 100.0 32 ............................. GGCGCGTAAACTTGCTGGTTCAATTGGCAGTG 406397 29 100.0 32 ............................. GAAGAGGATAATCGAATTGTTATCTATTATCT 406458 29 100.0 32 ............................. CTAGGAAACTAGTAAAACAACTGAGCGAAGCA 406519 29 100.0 32 ............................. GCGATTGACGACGAAAGGGCGCGACTGGCATC 406580 29 100.0 32 ............................. TTTGGGATAACGGAGAATTTACGTGCATGAGA 406641 29 100.0 32 ............................. CACCCCTTGAGATGGCTCAGGAATCCGTGCAC 406702 29 100.0 32 ............................. TCAGCTATAAAATAATTTTTAGTGCACCTTAT 406763 29 100.0 32 ............................. TAAACGCTGATGCATCTAAAGTTGCGGCAGAT 406824 29 89.7 0 ................T.........T.A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTACTGGCCGCCGGTGAGATTGAGCCACCGCAGGCACCGCCAGACGCACAACCGCCCGCCATTCCCGAACCGGCACCCTTTGGTGACGCCGGGCACCGGGGGCATGGCGGATGAGCATGCTGGTGGTGGTAACGGAAAACGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTTTGGCTGCTGGAGGTACGCGCTGGCGTCTATGTGGGTGATACCTCGCGCCGGGTACGGGAGATGATCTGGCAGCAGGTGGTGGAACTGGCCGAACAGGGCAATGTGGTGATGGCCTGGGCCACCAACACCGAGTCCGGTTTTGAGTTCCAGACCTTCGGCGAAAACCGCCGGATGCCGGTGGATCTCGATGGTTTGCGGTTAGTCTCTTTTCACCCTGTTGAAAATCAGTAAGTTAGCGCTCTTTAACAACCGGGAAAAATCGGTGGAATTTTACGGCCTTAAAAATACCTTATAAAACAGGTATATACTTTTAGA # Right flank : AGAAACAAATCGGGCACGCGGTGTGATTACGCGTGCCCGATGTGGGTGGCCGTCAGACAGGGTTAAAACGATTGCCAGTCGTCTGCGCTGGCTGATGTTTTAGCGGCGGCGGGTTTTTTGAGCGCTAGCGTCTTCGCTGCCGGTGCCGATGAAGGCGAAATCATCGGTCGGTTACCCGCCAGGTTGTAAGACCCACCCCTTGCTTCTTCGAGATGGAAAATACTGACCACCTGTTTTAACTGCTCGGCCTGCTGTTGCAGGGATTGCGTGGCATTGTAACCCTCTCTGACCAGCGAGGCATTTTGCAGCGTGGTTTGTTCCATTTTATTAATCGCCTGGTTGACCTGCTCGATGCCCAGTGACTGCTCCTGACTGGCGACGCTGATCTCACCAACCAGTTCACTGACTTTGCGCACGCCATCCACAATCCCCTGAATGGAGACCCCGGCTTTTTCCACCAGTCGGTTCCCGGCATCCACCGTTTCGACTGAATGGCCGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 682808-683264 **** Predicted by CRISPRDetect 2.4 *** >NC_013592.1 Dickeya parazeae Ech586, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 682808 29 100.0 32 ............................. ATGATACCATTGATGTTTTGCATATATGTCGG 682869 29 100.0 32 ............................. TGCGAGTGGGCATGTATCAGGGTTCCACAACT 682930 29 100.0 32 ............................. GCTGGACGAACAAAACGCTATGTTTTGGATAT 682991 29 100.0 32 ............................. CCTTGCCAGAGCAGATAATGGCATTGAGAGAG 683052 29 100.0 32 ............................. AGCCGCCATGGATATCACCTTTTTCGTTGACC 683113 29 100.0 33 ............................. TGGTCCGAGCGCTTCCACGGCTACGCCATCTTT 683175 29 100.0 32 ............................. GGGATTTCGGACTATGAAGGCAGCAGCCGCGA 683236 29 89.7 0 .................A.........GT | ========== ====== ====== ====== ============================= ================================= ================== 8 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAACGCACGGCAGAAAATCGGTCAGTGTCGAAGGCTGGTGTTGCACCAGCCTTTCTTTTTGCAGTTTGCTCAGTTGCTTGATGCGGTATTCCCATTTCAGCGCCGTCGAGCGATCGCCCGCCACACAGTGATACACCAGCATCAACGGCCCTTTTCCGCGCAGTGATCGCGCACCTTTGCCATTCTGATGCTCTGCCAGACGCCTGTCGACATCGGTGGTAATGCCGGTATAAAGCCACCCGCTGCCGGTGCGCAGCAGATACACAAACCAGATAGTCTCACTGTTGTTCACGCCATTTCCTTTTCGTGGTTTAGCGCTTATTTTACGGTGACAAGCCGATAAAGGCTGCCTGTTTGACGGCATTCATCGGTGGACGTGGGTGAGGAAAATTGCGACCTTTATTTATCAATAAGTTAGCGCTCTTTAACAACGTGAAAAAGTCGGTGGAATTTTTCAGGCTTTAAAAGTTATTAGAAAACAAGTATATACTTTTAGA # Right flank : TTGCCGTGATAGCACGGCACAATCCGTCGCGATACTCTGGGCTTTATTGTGATAATATTCACATTAATCGTGAATTATGTGCGTGTAATTTCTTTTTTATGTGAATAAAACCACAAAATGGGTTGTCATCTCCGGGTGAAATAGTGGTATTCGCCGGAGAGATGATCGTGTGGTCAATAAGCGGGAGCCTTGTATGACTGATTTAACTGTAGCAGCGCAGCGTGCGCTGGGATTGATGGATTTAACCACCCTGAATGATGACGACACCGATGAAAAGGTGACGGCCCTGTGTCGTCAGGCCAATAGCCCGGCGGGGAAAACCGCCGCTATTTGTATCTATCCGCGTTTCATACCGCTGGCGCGTAAGGTGCTGCGTGAGCAGGGCACGCCGGATGTTCGTATCGCCACCGTGACCAATTTCCCACACGGTAACGATGATATTGATATCGCGCTGGCGGAAACCAATGCGGCTATCGCCTACGGTGCCGACGATGTCGACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3674309-3674626 **** Predicted by CRISPRDetect 2.4 *** >NC_013592.1 Dickeya parazeae Ech586, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 3674309 37 86.5 33 ....T..C....TCG...................... TTCACCTTCGCGTCCAGCGTCACACGCATTAAC 3674379 37 94.6 34 .......C....G........................ ATATCAAAGTGAACCTTTGTTTTGTTTCGAATCG 3674450 37 100.0 32 ..................................... ACATCATTTTCGCTCCATGCTGGCTTATCCAT 3674519 37 97.3 33 .......................A............. CGAAAGAACGAACGCAGTGGTATCTCTGACATC 3674589 37 83.8 0 .......CA...TC.....................CT | A [3674620] ========== ====== ====== ====== ===================================== ================================== ================== 5 37 92.4 33 GTCCGTAAGGACCTTCCCTGACTGAAGGGATTAAGAC # Left flank : ACAGAGAACAGGCATCACTCACCGCCCCCGAAAAATGAAAGTAATCGGCTTTCAAGTCAGTTGTATGATACACAACGGTAACATTAGGCAGAGGCTATGATTGTGGTTGTGCTGGATGATGTGTTCGGTACGGTGCTGCAGCTGCGTAGGTAAGGGGAACTGTTACAAATGTGCTGCTTCTTGACGCCAACACACAGGCTAAAAACCCGCCTTGCCCGGGCATCACCACAACAATGTGCCCAGCCAGTCATGAATTCAGGCACGCAACTTGCTTATTTTCCCCGCTGCGCCCGTCGCTCTCCGGCAGGCTGTTTTTTCGTACAAAAAACCGGCAAAAATAAAATCATGCCGATAACAATTCACATGACATCAAGCCATTAGCACCGTGACGTTTGCACTGGCACCACTTTTGCTTAAAAACGTGTTTTTTGCGGCGGGAAAAACAGAAAAAATCGCACTGGCTTGATCAAACAAAAACAATGGGTTATACATTTTCATTC # Right flank : TAAAGAAAACCGCCGCGCCCGAGGTGATATGCATCGGGCGCGGTGTGAAGAATCATTGCGGGAAATAACGAAAGGAACATCTGACCGGCACCCACCGTCTGTGCCGTATTATCATCAGTGCCGCGTTAAAGCCGGCTTTTGGCTGATGTATACACCTGCGAGCGCTCTCGTTTGCCCACCGCCACAACCAGCACCACAATCTCATGCTCAAGCACGTGATACACCAGCCGGTAGCCTGCGGATCGCAGTTTGATTTTGTAGCAGTCCGCCATGCCGTGCAGCCGGTTGGCGGGAATATGCGGGTTTTGCAGCACCTCTTTCAGCTTTTTGATGAACTGTTCCCGCACCGGGGCACCCAGTTTCTTAAACTCTTTCAGGGCGTGCTCTTCAAACTCCAGCTTATAACTCATCCAGTGTGACCTTGACGCGTTTCCCCTTCATGCGTGAACGGGCGATGCTGGCAAGTTCTTTGTCTTCCAGATAGTCGGCCAGCGTTTCCC # Questionable array : NO Score: 3.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTAAGGACCTTCCCTGACTGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 4 3686016-3685843 **** Predicted by CRISPRDetect 2.4 *** >NC_013592.1 Dickeya parazeae Ech586, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 3686015 32 100.0 39 ................................ ATGAGATACTCAACGCGTATAACAGTGAGTTTGTGTCTT 3685944 32 96.9 38 ...................C............ TTAACAACAGAGAGGAGACAACCAAGATGAACAGTCTT 3685874 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 3 32 99.0 39 AATCCCTTCAGTCAGGGAAGGTCCGTACGGAC # Left flank : CCGCAGCACCTGATTCTGCCCTTCCCGGCGGGCGCTGATGAGCCGCTTCACGAATTGCATTCGGCAGGCTTCCTGCAAGGTCAGCCGATACTGAAGCAGACGTAATGCATTAGGCGGTGTTTGCGGGTTGAACAGGTGAGCGCAACTGTGCCGCCCAACCGCAATCAGTTCAATATCATGCTCGGCCAGTTTCAGCAGCAGGTCACTGTTAAGGGTGATGCCGGCACCCATCACAATACGCTCCAGATCGCCCAGCGGCAGCAGGCGAACCTCCCGCTCCGGGTGAGACAGGTGCAGTAACCCTTGTTGCAGCATGAGGTGATAGTCGGGCCTGTCGAGTACCAGCGTGGTCATAGCCACCCCCGTTAATATGAAGTTTTTTTAACCATAAAGCGTAGCGGGCAGCCGGCTGACCGGTTGGGCGGGCGGGGATAAAACACGGGAAAAAGTGAGAAGTGTGACGGCGCTTATAAACCCGGCACATTGCGCTGTGCCGGGCA # Right flank : TAATGAAAATTTATAACCCATTGTTTTTGTTTGATCAAGCAAGCCTGCTTTTTTCTGTTTTCCTCGCCGCAAAAAACACGTTTTTAAGCAAAAGCGGTGCCAGTGCAAACGTTGTGGCGTTAATGGCTTGATGTCATGTGGGTTGTTATCGGCATAATTTTATTTTTGCCGGTTTTTTGTACGAAAAAACGGCCCGCCGGTCGATGTCGGGCACAGTGGGGAAAATAAGCAAAATCTGTGCCTAAATGGGAACCCAGATGTCGCAGGAAAATTTATGGATAAGCGATATACCCGCCATACTTCAAGTTGCAGGTGCGTTAGCTTCCCTCGCTCACTCCAGTCACTTACTTGAGTAAGCTCCTGGGAATTCACTCGGTTGCCGCCTTCCTGCAACTCGAATTATTTAGGGTGTATACTTTCCCTCCGGGTGGATATTCATGAAATTAAAATCAGGAAGGGAATATGACTAATCAGGCAAAAGAGTTATCTAAAAAAGATGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCTTCAGTCAGGGAAGGTCCGTACGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 5 3687591-3687751 **** Predicted by CRISPRDetect 2.4 *** >NC_013592.1 Dickeya parazeae Ech586, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================== ================================================ ================== 3687591 22 100.0 48 ...................... CCAAATTCTTTAACATGTATTTCAACGTCTATCGTCCGTACGGACCTT 3687661 22 100.0 47 ...................... TTCAAATCGCGTCCAGTAGGACTTTTTGATGGGTCCTTATGGACTCG 3687730 22 77.3 0 .................TTCTG | ========== ====== ====== ====== ====================== ================================================ ================== 3 22 92.4 48 CCCTGACTGAAGGGATTAAGAC # Left flank : AGCGGCGCTGCGCCTCGCAAGGCTGGGCGTTGCAGAAATCGCTGTTTTTATTTGCACTTACCGTGCCGGAGCGCCAGGCATTATGCCGGGAACTGCAGCGCCTGATTGACCCGCAGGAAGACCGCCTGCTCTGCCTGCCATTTGACACGCCGCCCGGCAGTTTTCACCTCGGCCCGCGCTCTGACTACCTGCTCATTCACACCGACCCGCGCCTGAATGATTTTGTGTTTTAAGCACACAACCGGCACGCAAGTTGCTTATTTTCCTCGCTGCGCCCGTCGCTCTCCGGCGGGCTATTTTTTCGTACAAAAAATCAACAAAAATAAAATCGCGCTTACCGCAACTCACGCCACATCAAGCCATTAGCACCACAACGTTTGTAGTGGCACCGCTTTTGCTTAAAAACGTGTTTTTTGCGGCGGGAAAAACAGAAAAAGGCAGGCTGGCTTGATCAAACAAAAACAATGGGTTATAAATTTTCATTAGTCCTTACGGACTCG # Right flank : GCTTTCTCTGCCAGCGTATTGCGGTGGTATTTTTCGGCTATAGCTTTGTGCAATCGCTGTCCTTGCCTTCCCTGTGCCATATGCCAACAACACAACCAGACCCGCTTTCGAGACTCAACGCATGGCTTCCACCTACACCGCTGAATATCAACTCGTTATCAAAACGCTGCGTGAAGCGCGTATCGCCAAAGGTATCACACAGGAAATGCTGGCGCAGGCGCTGGAACGCCCGCAATCGTTTATTGCCAAGGTCGAAAACGGGGAACGCAGGCTGGATGTGGTGGAGTTTGTTCAACTGGCTCGTTTGCTGGCGCTTGACCCCGCCCAGGTGCTTAACAGCATCCCTTTCAGGCTCAAGCCGCTGAGTTAAGCCTACCCTCGGCAGCGAATCAACGCATACAACCCGTCCGGCACGATAGCGATTCGAGCCTGTTCACAATGCCGGTAAACACGGATCAACACACAGCGAAACGTAACCCCGGTGTAACCCCAGCGTAAAA # Questionable array : NO Score: 4.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:-0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTGACTGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 6 3915410-3916157 **** Predicted by CRISPRDetect 2.4 *** >NC_013592.1 Dickeya parazeae Ech586, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3915410 28 100.0 32 ............................ GCTACCGAGATCGCCACCTGCCGTGTATCAGC 3915470 28 100.0 32 ............................ AGCATCAGCACCGCTATAACCTCAGCCAAATA 3915530 28 100.0 32 ............................ ACGGCGTGGCCCGATTCCGGGGTGGTACTGGC 3915590 28 100.0 32 ............................ TTGATGACACAGAAAAGCTCGACCGCAAACAA 3915650 28 100.0 32 ............................ ATGGGCGGTTATCGCATGACGCCACACGCCAG 3915710 28 100.0 32 ............................ ACGGTGTACGTCACGGTCATTACCTTGGTCAG 3915770 28 100.0 32 ............................ TGAGATATCAGGCATGGGCCGGTAACCGCGAT 3915830 28 100.0 32 ............................ TAGGCAGCCCATCGCTGACCGGGACTCCAACC 3915890 28 100.0 32 ............................ TTATCGAATTCCGTATTAAAATCCTGCTGCGT 3915950 28 92.9 32 ...........TG............... AATCAGCGGTTGCGTCATCAAGATACGTGTCA 3916010 28 92.9 32 ...........TG............... CGATAACGGAGCGTCTTCCACTAATTGAGACG 3916070 28 96.4 32 ............G............... GAGCTGGAACCAGTTGATTGACGCCATCGAAG 3916130 28 71.4 0 ...........T.C.......GGT.GTG | ========== ====== ====== ====== ============================ ================================ ================== 13 28 96.4 32 GTGAACTGCCGCATAGGCAGCTTAGAAA # Left flank : CGGAAATCCCGCCCATGGCGATATCACACTGGTCAGACTGAAAATCTGGCATCAGGGTTTTCCAGCTGGTTTTCACCCATTCCACCTTCACGCCCAGGCTTTTCGCCAGCGACTGCGCCATCGCAATATCGATACCTTCGTAACTGCCATCCGCACGCAGCGAGGTATACGGCTTATAGTCCCCGGTAGTACAGACCTTCAGCACCCCACGTTCCTGAACCTGATCAAGATGAGAAGCCGCGCTGGCACTACCGGCCAGCCCCAATAACAACATCAATGAGAACCGTTTTTTCATGAAATATCCCTGCACGTCACGCCTGTCTGGCAAAAACGTCACTGTAGCACGCCATATTCACGAATATCGCTTTTGACCCTTTTTTTCGCCCCGTGATAACTCGTTGATTTTTAATGATGATAAAGGTGGGTTTTAAAAAAGGGTTTCACGACCCAAAACACGACTTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACA # Right flank : GGGGTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAACCTGTGCCGTGCATGGAGCACGTCACAGGTGGTCCGAACAGCGAAGGTGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCACTCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAATCGACACCGTTTATCCCGCACGAAACCACCCACCAACCTGACATACATTCGCCAGTCAATAACAAAGCACCCCGGCTGTTTACCAACAGCCCAAAAACGTTACTCCACCGTCAACACCGCTACCGCCTTTTTACGCTGTTTGATGGCATAACCCGCCCCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAAATCTGAATGCCCGGCGTCATCGCCATGATCACCAAAATCCCGGCCAGAAACAGCAGGCACAGAATGTTGGTCAGCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 7 3922318-3921208 **** Predicted by CRISPRDetect 2.4 *** >NC_013592.1 Dickeya parazeae Ech586, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3922317 28 100.0 32 ............................ TGCATCAGCGCACCGGGAATATTGCCGGTCTC 3922257 28 100.0 32 ............................ GTATACGGGCAGATCACCCGGCGCGCCGCCTG 3922197 28 100.0 32 ............................ TGGGAATGCTGAAGAACCGCACGGAGTTAACC 3922137 28 100.0 32 ............................ AGCGTGTACAATCGTTGTCGCCTGCTGTATCA 3922077 28 100.0 32 ............................ CGGCAGGTCAACGGCCAAACCCGCATCAGCGC 3922017 28 92.9 33 ............GT.............. AAAGCCAAAGAATCCCATCGGTTACATCCTCAT 3921956 28 85.7 32 .........T.TGT.............. TGATACGTGGGGCCATTGTGGAACGGGGCGAT 3921896 28 100.0 32 ............................ AGAATAAGCGCCTGCGCGCCGAAAATGATTCG 3921836 28 100.0 32 ............................ TCTGCATGTAGCGCATCCGGCAGTGCGGGGGC 3921776 28 100.0 32 ............................ ATTGAAAATGTGATTGTCCGGCTGGCGCACAC 3921716 28 89.3 32 ...........TGT.............. TGCGGCGCACGATTGAAGCCGAAAGTGTCGGC 3921656 28 85.7 32 ...........TGT.............G CCAGTGATTTGAGAAGGGCGCCTTCGGGTAAT 3921596 28 89.3 32 ...........TGT.............. TCAAGAAATAAGGCAAAACCAATGACCGAATT 3921536 28 96.4 32 .............T.............. AGTCAAAATAAGCTGGTCGGCTTCTTCGCGTG 3921476 28 96.4 32 .............T.............. CATGACTATCGCTATTCCGGCAAATTACGTTC 3921416 28 92.9 32 ............GT.............. TTACAATACGTGCTCACGTCGATATGAATATC 3921356 28 92.9 32 ............GT.............. GCGCCCGGACAATCAACGCTGCTAAGGTGCCA 3921296 28 89.3 32 ...........AGT.............. TCTCGTAAGGGCTTTTGTCGTCAACATTAACA 3921236 27 75.0 0 ...........AGT......A..-..CG | GG [3921213] ========== ====== ====== ====== ============================ ================================= ================== 19 28 94.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCGCTGGCGGCGCTGGAACAAACCGGCTGGTTGAAAGGGCTGCGCGACTATAGCACCATTACCGATGTATTAACGGTGCCAACGGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTAAAAAGCAGCGCTGAACGCCTGCGCCGCCGGGCGGTGAGTAAAGGCCGAATGACTGCGGATGAAGCCGCCGCCCGCATTCCCTATGCGGCGGAAAAACGCACCTCGCTGCCGTACCTGCCGCTGCGCAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGTTGCAGGAGAAACCAGTCGCCGGGGTGTTCTCCAGCTACGGCTTAAGCGCCATCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTGTAACGTATTGATTTTTAATACAGCAATCTGGCCGCCAGAAAAAAGGGTTTTTCCGGGAAAACGGCTATTTCTCTTTAACAATCAGGTGATAAGCGATTATTCGCTACA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGAAATAGTAGAGAGGCGCGATTGTCTATCCCGCACGAAACCACCCACCGCCCAGCATAAATCAGGCCGCAATCCCCCGGCTGTTACCAGCACCCCATCCCCGGCGGGCATAGCCGTTTCCTGCAAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAAGTGAAAGGAATAACTTACTGTACGGCAGCGAAGGCAGCAGCGACGCGCTGTACGTTGTGATGGTTTAACCCGGCGATGCAAACACGGCCGCTGGCGATGAGATACACACCG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 8 3931312-3933079 **** Predicted by CRISPRDetect 2.4 *** >NC_013592.1 Dickeya parazeae Ech586, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3931312 28 100.0 32 ............................ TCAACGACCGTCGGCGCTGTCAGTTGAGATAA 3931372 28 100.0 32 ............................ GCCACCTGCTGGGGCTGAATATTATGATGGAC 3931432 28 100.0 32 ............................ ATCCCGGCACTCGTCAGCGAGGAGTACATAGA 3931492 28 100.0 32 ............................ TTTTCGTTGCCCAACCCTTCCACGAGGTGGAA 3931552 28 100.0 32 ............................ AGCTGCAACGGTTCCCGATGTCGTGCCGGTGC 3931612 28 100.0 32 ............................ GGCGATAAATGCGTCTTTAAATTCCTGCACGT 3931672 28 100.0 32 ............................ AGTATGCGGGGTTAAGACGCGTCGAGTTATGA 3931732 28 100.0 32 ............................ TGGGGTGGATTAGTACGCTATCTGATCGACAT 3931792 28 100.0 32 ............................ AGCCAGCGGGCCTTTGTTCGGGGCGCGCCAGT 3931852 28 100.0 32 ............................ GAACATTACGCCGGGCCGCACAGACCAAAATG 3931912 28 100.0 32 ............................ CAGCTCAATGAAATGCTGGTTAAGCGCAACCA 3931972 28 100.0 32 ............................ TTGCGTGCACTTGTATGCGAACGATTTTTCAA 3932032 28 100.0 32 ............................ AATAAGGCGTACCGCCTGCGCGTGCTTGATCG 3932092 28 100.0 32 ............................ TTACGGCAGTTAATGAAACTCGGTCTACTTCT 3932152 28 100.0 32 ............................ CTGGATTGTTGCGATTGTAGAAACGGGTGTAT 3932212 28 100.0 32 ............................ TTAGCCAAGATTACCCCCGAAAAGTGCAACTC 3932272 28 100.0 32 ............................ ATGCATCACTACAGCTACGAAGAAATTATTGA 3932332 28 100.0 32 ............................ GCCCGGCTGGGCAGAACACCCCATGCGGTCAG 3932392 28 100.0 32 ............................ GACACACACCGGCATGTTGTTCATCGAGTCAA 3932452 28 100.0 32 ............................ TATCCACATAACGGGATGGTCAATGCCGAGTT 3932512 28 100.0 32 ............................ ATTGGCGCGCGACTTCGATTCTCAGATGTTTT 3932572 28 100.0 32 ............................ GTTGACCCAGCGACATGCCGCGCACGCGTTCG 3932632 28 100.0 32 ............................ GTTCACCGCTACGTTTTTCCGGCCAGAGATCA 3932692 28 100.0 32 ............................ GGCGCGCACGGTATGACCGGGCAATGCAGGCT 3932752 28 100.0 32 ............................ GCTATAACCTCAGCCAGATAAACAGACCCGAT 3932812 28 100.0 32 ............................ TTAATAGCGAGTTCTGACTAATAAGAATTGTC 3932872 28 100.0 32 ............................ GCTACGAAAACTGGTCCTGATCAAACTCGCAG 3932932 28 96.4 32 ...........C................ CAGATGTCAGACTGGTCTTTCCCGACAGCCGG 3932992 28 96.4 32 ...........C................ GCATAGATAGACGGGCAGGCATCACGCATCGC 3933052 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 30 28 99.8 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTGACCGAAGTACCGGTGCCGAGCATCACCACGCTGGTATTAGCAATCGGGATATTCCAGTACAACGACTGATTCCCTTCTTCGGTGACATATTCCACCCGCCCGCCATTGACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTTGTCGTGATAAAGCAACCCCACCCGCGTAATAACACGCAGGCTAATAATTAATTGGAAAACACGTAATACACTGGAAAGTAACGAGAATTAACCTATCACAACCCAAGCGAGAAAGTGAATGACGCCGAAAAGACTTTCCTTATTTCCGCACCCTTTTTTTCAGCCGCTATTTTCGGTATTGAAAAATCAACAAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGCGAAAATCGACAATTGCAGGCTGAAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : AACAGTTCTGGCGATTAAGGGGATTAAATTAGATTTTCACTGCCGTACAAGCGGTGGTTGACGGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCATCAAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCCTTCACGCTTTCAGGCACGCCTTCGGTGTCGGCGTGATGCGGTTAATCACGCACGAAACCCTCACTCTACCGATAATCCTCACTATCTAACGCCAGGAAAAGGGCAACCTGTCAGAACGACGTCCAATCACTATGGCTACCCGCTGCCGCCGCGGCCCGTTTTTCCGGCAGCGCCGGAGATAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //