Array 1 22291-21997 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACVB010000108.1 Actinomadura roseirufa isolate LMG 30035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 22290 31 96.8 35 C.............................. GGACCGCACGATCGCGGTCACCCGTACTGGCTGGC 22224 31 93.5 36 ....................A....T..... CAGCGGACGCGCTTGCGCGGGAAGGTTCGGTCCTCG 22157 31 96.8 32 ....................A.......... TAGCACCCTGGGTTTCACCGTCATCACTCGGG 22094 31 100.0 36 ............................... CGGCAGCCATGGCGATGTCACAATTCCAGAGGCTCA 22027 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 5 31 97.4 35 AGTTGCGAACCCTCGTAGGGGCGATGAGGAC # Left flank : GGGCTCACGACGTCGGCCCGCGGCCTTCGTTACGAAGAATGATCAAGGCCCAGGCAGAGATTCTTCTCTGGCCTGGGCCTTCTGGGTGGAGCGGGTGACGGGAATCGAACCCGCGCTGTCAGCTTGGGAACCAAACCGATCTTCCCCCATCAGCGGCCCGACCTGGCGCTCGTCCGTACCGCAAGTGACCGCTAATGCCCCTTGATCACCCTGCCTAATTGCCCGCTAATTGCCCGTCAATCAACCGCTGACCTGCGCACCCATCGCGTTCTCCGGCCCGCGGCTCGCCCACCCGCACGGGCGCTGCACGCTCCGGGGTGCTTGTTCGCGCGAACGACGCGCAACCCGTGACAGACCGTTTCGCGCGAACGAGTGCCCCGGCTCCAGGAGGGGTCTGGGGAACCACGGGGTTCCCCAGTCGCGCACGCTCAACCACGACACGTCGTCTCGCCGTCACTGTCCTTGAGGCTGCGGTGCGGTGATGGTCAGGCGCGGCGTCT # Right flank : CCCATGGTAAAGCCGCTGGCTGGATGGTGCATAGGCGACCGTGCATGGCGCGTGATTGCAGCGAACCTCCGGTCGTGCATGAGACCCCGGCGTGTCGCTGAAACGATCAAGACGGATCCCGGCGCGGACACGTCCCCAGCGTCTCAGACAGGGGGCGGTCGTTCGCACTCTTGGGTCGGGCTCTGCCTTCGGGGGCAGATCGGGACGGCGGGACCGGCCCGGAGAGGCCGCACGCCCGCCGTCCCGGGCTGGCCCGGCGGCCGCGTAGCGGGCGCCTTTAAAGACGTAAAGAAAGTTCTCATCGGGCTGGATTAGCCCATTTTGTCCATGGCCCGGCTATGGGGCTGCTGAATGCTGGCGGAATCGTCTCTTTGCAGGTCACGGACATGGCCTGTCACTTTTTCTCCGTGATCGCGTGTGTTCCGGTCCTACTTTTCGGATGTCGTATCCGCTGCGGAGGACGGGATGACCGACGCGAGAACAAGCCTGGAGGATCTGGG # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGCGAACCCTCGTAGGGGCGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 7176-6616 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACVB010000176.1 Actinomadura roseirufa isolate LMG 30035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 7175 29 80.0 34 C....A......T.T....C-......... TGGGTGTCACTGCCATTGTTGCAGTACATCCGCT C,T [7168,7172] 7110 30 100.0 33 .............................. CCGGCTCGCCGCCCGACCCCCCAAGGACCAGGC G [7088] 7046 30 100.0 36 .............................. GGCGGCCGTCCCTGTCTCCGTTCTACGGCCGGACCG 6980 30 96.7 38 .................A............ GGGGAGAGCCTCTCCCGCATCGCGATGGCCTACTACGG 6912 30 93.3 36 .....A...........A............ CTTCCGCGCCCCTGGCCTGGGCTTCCGGACCTGGCG 6846 30 96.7 39 .....A........................ CTGTTCGTCGTGGTGCTGGTGGCGGACCGCGGCCGACTT 6777 30 93.3 36 ..............T..........G.... GTGATCCACGTTGTCCCGGCCGGCGGCCGTGACGAG 6711 30 93.3 36 ..............T..........G.... GTGGACCCCGGAGAACCCCCCACGGCCGCCGCCTCC 6645 30 90.0 0 ..............T.A........G.... | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 93.7 36 GTTGCGAACCCTCGCAGGGGTGATGAGGAC # Left flank : GTCACCGGCTGCCGGAACTACCTGCCGAGGACCCGTAACCCGCAGCGCCCCTACCGGATCAAGGGCACGCCGCCGATCCTGATGACCAACAGCCGCCACGACGTCGCCACCCCGTACGCGTGGGCGGTGAACGCGGCCCGGCAGATCCCGGCGGCCGTCCTGCTCACCTACGACGGCACCGGCCACGGCGACTACCTCCTCAGCCGCTGCGCGACCAAGGCGATCGACGGCTATCTCCTGACGGTCCGAACGCCGCCGCGCGGCACACACTGCCCGAACGAGCCGCCCACCCTCACCCGCTCCAAGCGCCCCGGATTCCCCCTCCCCGGCCCCCGCTGACCCACAAGACCGGCCGCGCCGCCGCTCGCAGCAGGACTAACGAACAAAGCACCGGAAGACCTTTCTCCACTGCGCCGGTGACCGCAATTCGCCGGAGGGCGGGAAAGCTCAACCGACCAGACGGCCCCGTCCTCCCTCGCGGGAGGACGGGGCCGCTTCTG # Right flank : CCCAGGGTAAAGCCGCAGGTGATCGGCGGCTCGGGGCCGGTGCCGCATGTCAATTCTTCAGCGACCCTCCGGTTGTGCAGCGTACCCCGGGGTCCCGCTGAAACAGGGAGGGGAGGGACAGGATTTCGTATCCCCGCCGTTCATCTTGCTGGGCCCGGGACCTCGGGCGCGCGCCTTCAACCCGAGGTCCCGGTGTCAGGGAGCCGCGGCCCCGGCGCCCCGCGTAGGCTCCCGGGGCCGCGGCGTCTATGGGGGGGAGTTCCCTGCCCATGGCCTCGACGGCGGACGGCGCGTCCGGGCCGAGGTGGGGGCCGCGTCCGGACGGCCCGTACCAGGCGTACGCGGCCTTCTCCCGGTCCCAGAGGACGTACAGGGCGCCCTCGCCACGACGCAGCAGGTAGAGGATGCTCGCCCCGGTGGGACGGATCGGCGCGATGTGCGGGAAGCGCCGCTCGATCAGTGCGGCCAGCTCGTCCAGGCGCTCGAAGGCGTCGCTCATG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCGCAGGGGTGATGAGGAC # Alternate repeat : GTTGCGAACCCTCGTAGGGGTGATGGGGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 1 39093-38929 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACVB010000046.1 Actinomadura roseirufa isolate LMG 30035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 39092 30 96.7 38 .............G................ TGGACGCCCACACGGCACGGGCTCGGCGTGATCGCCGG 39024 30 100.0 36 .............................. AGGCTACTCGGAGGGCCGGGCCGATGACCCCTGATC 38958 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 98.9 38 GTTGCGAACCCTCTTAGGGGAGATGAGGAC # Left flank : CCTGGTCGTGACCGCAGTCGAACGCGCCGAAGCACGGTCGCTCCTTCGAGCGGAGGCGCTACCCGTACTGCGTGCCTGGGTCGTCGGCGCGCACGAGGCGTCAGAGATCTGGAAGGACCAAAGGCGTAGCGCAGCCTGGACGTACGAGCACGGGACCGCCCACTTCCATGGGAATTACTGGCCGAGATAGCGGCGGCGCGGCACCCGCAGCGGGCTGGCGGACGCGGCATGATGCGCGGCCCGGCGCGGCCGCCCGGTCACCGGCGCCCACGCCGCACGCTCCGGGCGGCCAGGCGCAGGGCCCGCAGCGGCCTGAGCGCCGCCGCCCCTTGATCCAAAACAGCCCAATTCGGCAACGCCGAGTCTCTGTTTATGCGCCTCCCGAGCAAGATCCAGACTCGTCCGCTCGTTGATAGGGAGTCCTGCCGTGCGTCCCTGGAGTCCGCTCTCGTCCAAGTCCGCCGTTAGTACCCGCGTGAGGAAGACATCGCCTGTCGCGT # Right flank : CCCAGGGTAAAGCCCCTGGCTGGATGCCTTGTGGGCGAGCGTACATGGAGTGCGATTGCAGCGAGCCCCCGGTGGTGCACGAGACCCCGGCGTGTCACTGAAACGATCACGACCGATCTCGACAGCAGGCACAGCAGTAGGGGGTTCTTACTGGGGTCGGTGGGCTTGTCTCGTGAGTTGGTCGATCTTGTCGAGAGTCAGTGGCCAGGGATAGGTGTCCAGGCGGGTGCCGCCGGTGCCTGGGGGGTGGGGTTCGAACTCACCTGGGCCGTAGAGGACGCGGACGCCTTCTGCGCGGAGGGTGTCGATGCTGTGTTGGAGGGCGGTTCGGGCTGCTAGGGCGGTGTTGATGAAGGGGAGGGCGACGATCGGGATGCCCAGTCCTGGGGCTTCGGCGAGGATGCCGAGGGCGTAGGTGTCGCTGATGCCAGCGGCCCATTTGTTGAGGGTGTTGTAGGTGGCCGGGGCGACGATGATGGCGTCTGCTCTCGGGGAGCGGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCTTAGGGGAGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 27190-27612 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACVB010000006.1 Actinomadura roseirufa isolate LMG 30035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 27190 29 100.0 37 ............................. CATTTCGAAGACGGTGCGCTTCTGTCCGTCCTTCTCG 27256 29 100.0 38 ............................. CCCGCCGTCCGCGAGGAGTTCCAGTCCCATGAAGAGTG 27323 29 93.1 38 .........A.....G............. CGAACTTGAACTCGGCGATGCCGATCTCGTCCATTCCC 27390 29 100.0 35 ............................. CGCGTACTCAAGCGCCGTCCCACGCGCCCATCGGC 27454 28 93.1 38 .............-..G............ CGTAATGCCCGTACCCGGTGTGCGGCGCGTCCTCCGAC 27520 29 96.6 35 ............T................ CACGCTATCTCGGACACCGACGATGCCCGGAACCT 27584 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 97.5 37 GTCCTCATCGCCCCTACGAGGGTTCGCAA # Left flank : GGCCTACCCAGCCGGATGCGACTGGTTCGTCAACCTCGCCGAAGCAGACCAGGCCACCAAGACCACAGTCCTGCAAGCCGCCTACCAGGCCCCGCTAACCCCGACCGACCTGGCAGCACTCTGGCCGACGGGCCCCACCATCGGCGGCCAAGACACCTAAGAATCAAGATCACCGGGAGCGGCAGAGCCCCGGATGAGAACTTTCTTTACGTCTTTAAAGGCGCCCGCTCCGCGGCCGCCGGGCCAGCCCGGGACGGCGGGCGTGCGGCCTCTCCGGGCCGGTCCCGCCGTCCCGCGCTGACCCTCCAGAGGCAGAGCCCAACCCAAGAGAGCGCGAACGTCCGCGCCTCCCTGAGATGCTGGGGACGTGCCCACCACCGAGGCCCGTCTTGATCGTTTCAGCGACACGCCGGGGTTTCGTGCACGACCAGAGGTTCGCTGCAAAAACGCGCCATGTACGGTCGCCTATGCACCACCTCGCCAGCGGCTTTACCATGGGG # Right flank : ATACGTCCTCAGAGAGGCGTGCCGTTGCCGTGGTCAGGTCCTCGTTCTCCGGCAGGGATCGCGAACCCAGGTCTGTGGCGAGCCGGAAGCCGCTTGAGCGTGCTCGAACCAGGGGGCTGCGCAGCCTAATGCAGTTGTTTTTGTGGTCTTGGCCGTTGTCGGCCTGGATGGACACGGTGACGTGCCCGGGGCGCGCGATCGCGCGGACGGCGGTCAGGTGTGACGGTCGGTAGCGCGCGATCGTGTGTCCCGGGGCCAGGAGGGGTCTGGGGAGCCACGGGGTTCCCCAGTCGCACGCGCCCAGCCGACAGCGCCAGCCCCCGCGCTGCGAGAGATCACGGTGAGGGTGCGGTGGCCTTGAAGGCTTTGCCCGCGTTGCGGCGGGGCTTGTGTTTGTTGGAGGGGTTCCAGTTCCAGCGGCCGGTGTCGGCTTGCCCGCGGCTTGCGCGGATTCGCAGGACGGGCCATCGGGGCGGTTTCTTGATCGCGCGGGGGCACTG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGTTCGCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 54465-54893 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACVB010000007.1 Actinomadura roseirufa isolate LMG 30035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 54465 30 96.7 36 .......C...................... TCGAGCTCGGCGGTCATGCTCTCCGGGTACTTCTGG 54531 30 100.0 36 .............................. GACCAGAACGAGGCGTCGGACAGCCCCAGGTTCTCC 54597 30 96.7 35 ........G..................... GGGCATCGATGGCTCCTGTACCGGCGGGACCCCAC 54662 30 100.0 39 .............................. CGGCTTGGCGGCCCGATGGTGGTATGACGTAGGCCGAAC 54731 30 96.7 36 ................A............. ATCCAGGTGATGGCCTGGGACAGGTACCACTCGATG 54797 30 100.0 37 .............................. AGCCCGAACAGCTCATGGTCGGCAAGCACGCCGACCA 54864 30 86.7 0 ...............T...........GGG | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 96.7 37 GTCCTCATAGCCCCTACGAGGGTTCGCAAC # Left flank : GGCCGCCTCGTGAACGCCGAGCGCCTGGAAGAGCTGGCAACACTCGTGAACCGACGCTTCCCCAACATCTCGGCGAGGCTGCCATCCGGCACGCAAATCCTCCACGTCCGCTCTCGCGAAGAGGGCCCCCGCTTCGTGGTCTGGCGCCCAAACCCCGGCGCCTACGTCTGGTACTCCGACCCAGGCCACGGCAAGCACCTAGGCACAACCGCCGACCAAGCCGCCAACGAAATCGCCCGAACCCTAGACCTCACCACCCAATAGACCCCGTGGTCCCCGGGTTAACGGCGCGCGCCCGGGGACCACGGTCCCGCCTGAAACCACCCTCACGCTCTGGGCGCCCAAGAGGGTGCACGGCGGGCGGAACGCTGCGATACTCAACCACGTCGGTTCTCGTTTTCAGCGGGACCCCCGGGTCCGCTGCACAACCGGAGGCTCGCTGAAGAATCGACCGCCAGCACCGCCCCCAAGTCGTGGACCACCTGCGGCTTTACCCTGGG # Right flank : GATAGGACGCCTTCGCTTCGATGCGGAGGTGAAGTCCTCGCGCCGGATCGGGGCAGCTACGCCAGGGGTGAGCCGTTGTCGGCCGGGTAGGTGATCACGCGTGGACCCGGCTGGTGGGGCCGAACCGGGCCCGTGGGGCGAGCGCTTCGTGTCAGCCGGGGACGGTGTCGTGGGCGATGATTGTTGGTGGCCAGTGCGATTCCTCACTGGCGGCCAGTTAGTGGGGAACTATCTGGCCGTGGGTGTCCACGTTCAGTGATCGCGTCGCGGGCCGCCAAACGTGCGGGGTTGGGCCTTCTGAGAGTGCGATGCCTTGGCCGGTATCGGGCGTCGTCGGCGTGCAGATGGCGAGCGGCAGGAGATCCAGGTACCGCTTGTCCAGCGCAGAGCGCGCCTGGAGCATGCGTGGCAGGGAAGTGGTCCCGCGCCCGGCGTGGACGGGACGCGAGTCCTTGCCATGCAGGACAGCGAGCCTCTGGCGTTCATGCCGGGGTGGCGAC # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATAGCCCCTACGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 22865-22224 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACVB010000071.1 Actinomadura roseirufa isolate LMG 30035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 22864 30 96.7 31 ............................T. CCTTGACAAAGACGCCGTTCTCCAGGCCGCG 22803 30 96.7 31 .............................A TCCTCCACACCAGCAGGAGACGCGACCCCTC 22742 30 96.7 31 .............................G GCGCCCGGCCTTGACCGGCCGTATCCACGCC 22681 30 100.0 32 .............................. CTGGCTGATCAGGGCTCGCGGGCGGGGCTTCT 22619 30 96.7 31 ......T....................... ACGCCAACGCGGTCCGGATGACAGGCGCCGC 22558 30 96.7 31 .............................C GTTCTGCCTGATCGAGCACGATGTTCGTGAG 22497 30 100.0 31 .............................. CGGCACGGTCACCGGGGACGATTGTGATCGT 22436 30 93.3 31 ...T.........................C GGATTAACGCACGCCGCGCGGCCGCCGGTGA 22375 30 96.7 31 .............................A GCTCCGGGGTCTCGTGGCCGACGAGGAACCC 22314 30 100.0 31 .............................. CCTGCTGGTGGCTGGGCGACTTCAAGCCCGC 22253 30 90.0 0 ...........................GTG | ========== ====== ====== ====== ============================== ================================ ================== 11 30 96.7 31 GTGCTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : GTGTCACGCTGCAAAGCGACCATGGCATGAACATCGAATCCGGACGCAACTACGGCGAAGACGTCTTCTAGTGACCATCATCATCCTGACCAGCTGTCCTGCCGGCCTGCGCGGCTTCCTCACTCGCTGGCTCATGGAGATTTCCCCCGGCGTCTTCATCGGCGGCCCCTCGGCCCGCATCAGGCAAGCCCTCTGGAACGAAGTCCACCAATACGCCGACACCGGTCGAGCCCTGCTCGCCTACACCACGAACAACGAGCAAGGCTTCACCTTCGAAACCCACGACCACAAATGGCATCCAGTCGACCACGACGGCATCACCCTCATCCGCCGCCCCAAAGCCCAGCCGACCGTCTCGGTCAAACCCCCACCGGCCGGCTGGAGCAAGGCATCCAAGCGCCGCCGCTACGGCAAACGCTGATCAAATGCCCGAGATGCCCGGCTCTCCAAAAGTGCTTCCAAACGACACCTTCACCCGATGAACGCGCAGGTCAGCCAGA # Right flank : CGATCTCGACGAATACGCCGCATCCATCGAGTGTCCATCGCGCACATGGAGTTCGTGATTCTCGTCCGCGTGGAACCTCTGGCTAGGTCGGCGAGTGTGAAGGGCGTGTTGCACCTATGTATTGCTGTTCGCGGTAAGGGTTGCCGGTGAATTGGGAGATGCGGACGACGTCGCCGGTTTGGGGGGCGTGGATCATTCGGCCGTGGCCGAGGTAGAGGCCGACGTGGTGGATGGTGGCCGGGCGGGTGGGGTCGGTGGCGAAGAAGAGCAGGTCGCCTGGTTGTAGGGCGCTGCGGGGGATGTGGGGGCCGGTGTTGTACTGGTCGGCGGCGATTCGGGGAAGTCGGATCCCGGCTTGGGCCCAGGCGTACTGGGTCAGGCCAGAGCAGTCGAAGCCTTTGATGCCCGCGCCTTGGGCGATGCCGTAGCCGGGTCCGGTTGGTCCTCCGCCGCCCCAGGCGTAGGGGGTGCCGAGCCAGCGAAGCGCAGCGCGAACGGCC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32463-32979 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACVB010000071.1 Actinomadura roseirufa isolate LMG 30035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32463 29 100.0 32 ............................. TGGATGACCACCGCGAGCGTCTCGCATGACGA 32524 29 100.0 32 ............................. TGGGGCGAGGACGAACCTGCCCCTCGCGTCGT 32585 29 100.0 32 ............................. GCGCCGGTCAGGCCCTTCCAGGCGGCGGCGAG 32646 29 96.6 32 ...........A................. CCGGCGACCGGCTACCGAGCGTCCAGACTGCT 32707 29 100.0 32 ............................. CATTCCGCCGGGGATGGCCCACGCGCCGCAGT 32768 29 100.0 32 ............................. CATTCCGCCGGGGATGGCCCACGCGCCGCAGT 32829 29 100.0 32 ............................. ACCCGCGAAAGCGCCCCTCAGAGGGTCCCCGC 32890 29 93.1 32 T.......T.................... TCCCACTTTCTTCACGCAAGGCCGCGGGTTCC 32951 29 96.6 0 .....................G....... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GAACCCATGCATCCCACAACAACCCTGCGACGGCCCCACTGTCGGCCAGGTGCCGCCACAGTGGCAACCATCCGTCCGTTTTCCGATCATGCTTAGCCCAAACAGACCTGGCTGCCCCCGTGAGTTGCCCGCGAAGCCATGCGCCACCTGTCTCCCCGTTGAACACAGCAAGGATCTAACACATCGTGATCGGCTCGTTTCGCTAAACCCAGCAAGCGGCTCTGAGTGGCTCTTGCTGCTGACGGCTTCGTGCCTCGAAGGAAGCTGTTGAACAGGGAAAACGTGCGAACGATATATCGGCGAGCTCGTTGTGTGGCCACAAGGGGCCACTCAAAGCAGGGGGTGCGTGAATGTTTCAAATCAGCTCGCTCGTCCAGCTTGGCGAAAGAAGCCTGCTATTTCATCTGCATCATCAGAGTCCCTATTAATCCCGGATGTCCGATTCTCGGCAAGTGCTTAGAATCCGCTCCATCCTGAGATAGGTACCCAGGTCAGGCAGT # Right flank : GGTAACCACCACGGTGTCAACGGCGGCTGAATTCTGACCCCCTGGGGACGTGTGAAAGTTGACCCCTTGATGTTGTTGGTCGTTGCTGTCTGTTACTGGTCGTTGTTGTGGTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //