Array 1 120050-123435 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDTG010000003.1 Pseudonocardia sp. H11422 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 120050 30 96.7 31 .............................C GCTGCCCTGAACGTGGCCATGCACGCCGCCG 120111 30 96.7 31 .............................G GGCTGTCGGTGCGGTACGGCGACAGCGCCAC 120172 30 96.7 31 .............................G ATTCCGGGTTCGTCATCGCCTACACCGGGCA 120233 30 96.7 31 .............................G CGCCACTAGCTGAAGCATTCCGCTCACCCTT 120294 30 96.7 31 .............................T CCGGGCAGCCCAGCAGCTCGAAACGGGCCGC 120355 30 96.7 31 .............................G GTCGTCCGCACACGTATGACGCGGCGACTCG 120416 30 100.0 31 .............................. GCACCGACTGGGCGGCCTCGAGGATGGTCTT 120477 30 96.7 31 .............................G CGCGGCGGGTGGCCTCGTCGCCGGCCTCGCC 120538 30 96.7 31 .............................C ACCCCGGCACCGCCACCTACGCGCATAGTCA 120599 30 96.7 31 .............................T CGAGCACCAGCGCGGGCGCCTCCTTCGGGTC 120660 30 96.7 31 .............................C CGATCGCGAAGATCGACGCGATGAGCACGAC 120721 30 100.0 31 .............................. GGGCGACCGCGGCGGACAACAGGCCGAGCCA 120782 30 96.7 31 .............................G GGTTCACCGGGCTGGTCTCGTGGCGGGTGAT 120843 30 100.0 31 .............................. ACGACGGCACGCACCCGAACGAGGCCGGCTA 120904 30 96.7 31 .............................T CGCTCGACGGCTGGAGGTAGTGCTCGACACG 120965 30 96.7 31 .............................T GCCGGGCCAGCATGGTCCTCGTCGCCGAGAT 121026 30 93.3 31 ............................TC CGGCGACCACACCGGCGGTAGCGACCCTGGC 121087 30 96.7 31 .............................T GGCCCTCGAGGATCGCTTCCTTCCCGACGGT 121148 30 100.0 31 .............................. GCCAGTGCCGCTCGATGGGCTTGCCGAGCCC 121209 30 96.7 31 .............................C CGACACCCTGCGCTACGCCACGCCCAACGAC 121270 30 96.7 31 .............................T CGTCCCGGCACGCCCGCGGCAACCGGCGCAG 121331 30 100.0 31 .............................. ACGCCAACTCGGGTGTCCAGCCGGCCACCCC 121392 30 96.7 31 .............................C GGCGCAGCGGCCCGGTCGGGACTTTGATGGC 121453 30 96.7 31 .............................G CCGAGCCGGTGTAGAGGTCCCGGGCCGGGGC 121514 30 96.7 30 .............................G CCGGCTCCGCGGAGGCCCCGCGCTGGGTCC 121574 30 96.7 31 .............................T CTTCGGGGAATTCAATCTGGCTACTCAGCTG 121635 30 96.7 31 .............................G GTCGCCGCCGCGCTCGATGCCGCCGATCCTG 121696 30 96.7 31 .............................C CACCGAACCGCGAGCGAGAACACCAGCGCCA 121757 30 96.7 31 .............................G CACTGATCGGAGCCGCACCCCAACTCGGGGT 121818 30 96.7 31 .............................T CCCCGGCTACGCATGGGACGACAAGGCCGCC 121879 30 100.0 31 .............................. CGGCCCCAAATACACCGAGTCGGGCCGGTCG 121940 30 100.0 31 .............................. CCCCCGTGCGCACCACACACGACTCCTGCGG 122001 30 100.0 31 .............................. CCCCCGTGCGCACCACACACGACTCCTGCGG 122062 30 100.0 31 .............................. GGCCCGCGTAGAGGCCACGGCCGTTGCAGTG 122123 30 96.7 31 .............................C GGTCGTAGTCGCCGGGGGCCAGACCGTACTC 122184 30 100.0 31 .............................. ATCCTCGGGGCCACCCCTAGCCCGGTCGCGC 122245 30 96.7 31 .............................G CGCAGGATCCGCGGGCGCTGGCCACGGCGCA 122306 30 100.0 31 .............................. CCGTGCGGAACCGCTTAGCGAAGTCCAGCAC 122367 30 96.7 31 .............................G CCTTCGTGATCGACGGCGCGATCTCGTCGAA 122428 30 100.0 31 .............................. CCCGGCGGCCGGCGGGCTGCTCGGTGTCGCG 122489 30 100.0 31 .............................. GCTCGGCCAGGCGGTCCGCCTGGGCCTTGAC 122550 30 100.0 31 .............................. TGACCGGGCTGACGACGTCACTCACGGTGCT 122611 30 96.7 31 .............................T TCCCGCAACTTCACCGCGCCCTGCTGGTCCA 122672 30 96.7 31 .............................T CCTCTCGCTGATCTTTGGACCGCTAAGAGAG 122733 30 96.7 31 .............................G GGATGTCGACCAGCCAGTTCGGCACCACGGC 122794 30 96.7 31 .............................C GTACGGAGCGTTTCACAATCTGCGACCGGAA 122855 30 96.7 32 .............................T CGACTTGCAACGGTGGGTGCGCGACCTCGACC 122917 30 96.7 31 .............................G TGTGCAGCGTGGTCTGGCCCTCGGCGGACTC 122978 30 100.0 31 .............................. AGGCCCGCCGCGCGACGGCGCATTCCCCGAT 123039 30 100.0 32 .............................. GCGCCAGATATTCGGCGTAGGCGTCGCGCTCG 123101 30 100.0 31 .............................. CGTCCAGGGCCTTGTGCGCCCGGCCGACCTC 123162 30 96.7 31 .............................G GCTGGTCGGCCAACGACCGCAGCGTCATCGC 123223 30 100.0 31 .............................. GCAGCGCCCCACCCGGGTCGATCCGGATGGC 123284 30 86.7 31 .......T..T..............C...C GGACGGTGGGTTACGCGGGTTCCGGTGACCT 123345 30 93.3 31 .........................C...G GGCACACCCACTCGGCGCCGCTCGAGGCGAG 123406 30 93.3 0 ......................C......G | ========== ====== ====== ====== ============================== ================================ ================== 56 30 97.4 31 GTCGTCCCCGCGCTCGCGGGGGTGGTCCCA # Left flank : CCTACGGATCCTCCGACGATGTGTTCGCCGAGTCCGACCGGTCCTACGCCGAGATCGCCGAGTGGCTGGACGAGGACTGGTGACCGTCATCGTGGTGGCCGCCTGCCCGGTCGGACTGCGCGGACACCTCACCCGGTGGCTGCTGGAGATCTCCGCAGGCGTGTTCGTCGGCAAGGTCTCCGCCCGCGTCCGGGGCCTGCTATGGCAACGGACCGTCGAGATGGTCAAGTCCGGTCGGGCGATCATGGTGTTCTCGGCGAACAACGAACAGGGCCTCGACTTCAAAGTCCACAAGCACGAGTGGATCCCCATTGACGTCGAGGGCGTGACCCTGATGCTCCGACCGAACGAAACAACGGGTGACCCAGCACAGGCGTCGACGGAGCGGACGCACGGATGGAGCAGCGCGAGCCGGCGCAGGCGGTTCCGGGGGCACTAACCGCCAGCCCAAGTTGACTATAGATGCGGTACTCGCCGACTAGCATCGCTGCTCAGCAAGT # Right flank : GCGTCGCCGCGGGCGTTGCGGGACGTGCTGGGGTCGAGCTGCGACCCGGGAAGCGGCTGTCGCAAGTCCGCACGTGTCTGTACCTCGTCGTCGACCAGCCGGCCTGTGGGTCAGCTGGCGACCTCGGCGTAGGTGTTGCCGGTGCCGTCGGGTTGGACCCATGCGGTCGCGGTATCGAATGCGATGCCGTCGCCCGCAGTGGCCACGAGAAGGCCGTTCACGCTCTGCCCGGCTGAGATCTCCTCGCGGTTGAGGCATGAAGTCGAGGAGTCCGCTGGACGCAGCGACGCGCTGAAGATGCACACGTCCTCGGCGATGTCCTGATACCTGCTCGGGGGAGGGAGGAGGCCAGCTCCACCCTTGTTCAGGCAGGCGTTGCGGTCCGGGTCGATGCGGGTGGCTATGGATGACTTCACATAGGTCACCGGAGCCAGTCCGACCGCGAAGAGGTTGGTGCCAGCGGTACCGATTCGACCGATCGGGTTCGGAGCGCTGCGGTC # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCTCGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8379-8072 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDTG010000101.1 Pseudonocardia sp. H11422 Scaffold96_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================== ================== 8378 29 65.5 68 AC.A........AG.......AC.ACA.. GTGCTGGTGGCGATGCGGGTTCGCGGGGGTGGTCCTCAACGCAGGCCGCAGCCCACACCTGGAGGTCC 8281 29 96.6 32 ...........C................. CCTCGCCGACCACGCCTGGCTGGATGCCGTCG 8220 29 82.8 29 .......................T.AGGT GAACTTCTGATCGACAGTGTTGAAAACCG T [8200] 8161 29 100.0 32 ............................. GCGGGCGGCGGCCACGGGCTGCCCGGGGTGGG 8100 29 96.6 0 ...............A............. | ========== ====== ====== ====== ============================= ==================================================================== ================== 5 29 88.3 40 GTCGTCCCCGCGCTCGCGGGGGTGGTCCC # Left flank : GGTGCCCGCGAGGTGCCCGCACAGGCGGGCACTGCCCGGCTCGGGCGGGGCGCCGCCGACCAGGGACCAGGCAGCGGTGATCGCGCCGCTGGTCAGCACGGTCAGCTCGTCGCGCCGCTGCACCTGCCAGGTGTGCTCACGGTCGAGCTCGGGAGTCGGGTAGGGCTCGCCGGCGCTGATGAACTGCAGTGTCCAGCTGCTCGGTTCGCCCACCACCGGCGGTGGGGCGCAGCACTCGATCTCCCAGTCGGAGACGAACACCTCGACGAGGTCGCGGCCGGGCGGGGACGCGGGGGTGGGCTCGGTGAAACGGTCCATGCGAAGACCCGTGTACTCGACAAGGCCGGGGCGACGACGGCCCCGGACACGGGCTACCTGTGATCACCACCGTAGCCGGCCCCTGACCGGTTCGCGTGCGAGCCCGGTGCCGATGACCCTGCCCCGCACCCCGGGGCTCCTCGGCGTCGATCGGTACCGGTGAATCGCCACAAGGCGAGCAG # Right flank : CTGCGGAAGCGCCGCGAGGCGGAGCACGTACAACCGGGTAAGACAGCCTCAGCCGCCGCGGACCGTGACAGTTGTCGCGCTCGACCTGCGCCCAACCGGCGTGGATCGATCCCGGAGCGGCTCAACTACCTGTTCGAGACGGTCCATCCGCCGGGCCGCAAGCCGTACAGCGCGGCCGAGGTCGCCCGCTGGATCAACGCCAACGGCGGCCAGATCTCCGCGGTCTACATCCTCAAGATCCTCAACGGTGAGCGGGAGACCCCCAGCCACCGCTACCTCAAGCAGATCGCCCAGTTCTTCGGCGTCTCCCTTGGCGTCTTCTACGACGACGACCCGCCAGAGCTGGACGCCGAGGCGCTGCACGCCCAGATCGCGCTGCGCGACGACAAGGTGCAGTCGATGATGCTGCGGGCCTCACGGCTCTCGCCCCGATCCCAGGACGCGATCAGCGACATCATCGACAACCTGCTCCGGGCGGAAGGAAAGGCCCCCGAGCCCGA # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.41, 5:-1.5, 6:0.25, 7:-0.66, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCTCGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //