Array 1 51800-52369 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFPM01000108.1 Escherichia coli strain JML099 sequence108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 51800 28 100.0 32 ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 51860 28 100.0 32 ............................ AAAACGGCGGGTTTTTTACGCGTGTGGCTGCA 51920 28 100.0 32 ............................ GTTAACCGTTTCACACTTAACACTATGAACCG 51980 28 100.0 32 ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 52040 28 100.0 32 ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 52100 28 100.0 32 ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 52160 28 100.0 32 ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 52220 28 100.0 32 ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 52280 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 52340 28 85.7 0 ....................A...C.CT | T,C [52360,52364] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 61427-63256 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFPM01000108.1 Escherichia coli strain JML099 sequence108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 61427 28 100.0 32 ............................ TGAAAGTTGACGCCAGCGGCGACCCGCGTCAC 61487 28 100.0 32 ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 61547 28 100.0 32 ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 61607 28 100.0 32 ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 61667 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 61727 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 61787 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 61847 28 100.0 32 ............................ TCGAGCGTACCAGGTTTACTGTCGTCATATAC 61907 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 61967 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 62028 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 62088 28 100.0 32 ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 62148 28 100.0 32 ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 62208 28 100.0 32 ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 62268 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 62328 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 62388 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 62448 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 62508 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 62568 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 62628 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 62688 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 62748 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 62808 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 62868 28 100.0 33 ............................ GTTCGACGATTGAGTCCGCCGCTGTTGTTTGAT 62929 28 100.0 32 ............................ CGGCGGACCACTCATCATCGTATAAATCTTTC 62989 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 63049 28 100.0 32 ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 63109 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 63169 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 63229 27 92.9 0 .......................-C... | T [63249] ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //