Array 1 4357-3430 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIB01000468.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 4356 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 4295 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 4234 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 4173 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 4111 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 4008 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3947 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3886 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3825 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3764 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3703 29 96.6 32 ...R......................... GCAACCCATTAATTAACTAAGCAGTAATAAAC 3642 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3581 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3520 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3459 29 96.6 0 A............................ | A [3432] ========== ====== ====== ====== ============================= ========================================================================== ================== 15 29 99.3 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : C # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //