Array 1 276971-278392 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAND01000011.1 Streptococcus agalactiae strain AB-22 NODE_1_length_322168_cov_63.9194_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 276971 36 100.0 30 .................................... TTTTGGAAATCCATATAATCAAATGATTTC 277037 36 100.0 30 .................................... ACGATGTTTGTGAAAGACAAAATCTTCGCT 277103 36 100.0 30 .................................... GTTGATCTTATTCACGTTTCGTGAAGTTTA 277169 36 100.0 30 .................................... CAGAAAAAATCATGGCGAGAGCCTTGCTCA 277235 36 100.0 30 .................................... ATTAATATTGGTCAGAATAAGCTATTTCAG 277301 36 100.0 30 .................................... GATATTTGGAAAGATTCTGATTTTGGTAAG 277367 36 100.0 30 .................................... TTACCGAAAGAGTGGAAAAACTACTCAGTG 277433 36 100.0 30 .................................... ATCCATTCCTACAGGAATCACTCAAAATAT 277499 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 277565 36 100.0 30 .................................... CAAGAATTATAGTAGGTTATTAAAGTTAAT 277631 36 100.0 30 .................................... CATGCTTGCTGTTGTAAATTGCCCGACTGT 277697 36 100.0 30 .................................... ATCAACTGCTAGATACGATAACACGACAAC 277763 36 100.0 30 .................................... TACCACCTGATGGATTATCAAGTGATAAAT 277829 36 100.0 30 .................................... TAACTTTAATTCGATTATGTTTTGGTTATC 277895 36 100.0 30 .................................... GTAAGTATTTTAAACGTGACTATTCCTGAA 277961 36 100.0 30 .................................... TTTTTATTATGGAAAGTAATCATTATTTTT 278027 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 278093 36 100.0 30 .................................... AGGGAGGAGAGAATCAATGCCGAATGCTGA 278159 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 278225 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 278291 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 278357 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 40-1131 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAND01000019.1 Streptococcus agalactiae strain AB-22 NODE_27_length_1172_cov_55.5753_ID_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 40 36 100.0 30 .................................... TACCACCTGATGGATTATCAAGTGATAAAT 106 36 100.0 30 .................................... TAACTTTAATTCGATTATGTTTTGGTTATC 172 36 100.0 30 .................................... GTAAGTATTTTAAACGTGACTATTCCTGAA 238 36 100.0 30 .................................... TTTTTATTATGGAAAGTAATCATTATTTTT 304 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 370 36 100.0 30 .................................... TTGTAATATTTGGTAACTCTTCTTTTGTTA 436 36 100.0 30 .................................... TCCGACCATGTCAGTCCAACGGTATTTTGT 502 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 568 36 100.0 30 .................................... TTGTAATATTTGGTAACTCTTCTTTTGTTA 634 36 100.0 30 .................................... TCCGACCATGTCAGTCCAACGGTATTTTGT 700 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 766 36 100.0 30 .................................... AGGGAGGAGAGAATCAATGCCGAATGCTGA 832 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 898 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 964 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 1030 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 1096 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTCCAAAACATCAACTGCTAGATACGATAACACGACAACG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 40-801 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAND01000027.1 Streptococcus agalactiae strain AB-22 NODE_34_length_802_cov_52.1241_ID_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 40 36 100.0 30 .................................... TAACTTTAATTCGATTATGTTTTGGTTATC 106 36 100.0 30 .................................... GTAAGTATTTTAAACGTGACTATTCCTGAA 172 36 100.0 30 .................................... TTTTTATTATGGAAAGTAATCATTATTTTT 238 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 304 36 100.0 30 .................................... TTGTAATATTTGGTAACTCTTCTTTTGTTA 370 36 100.0 30 .................................... TCCGACCATGTCAGTCCAACGGTATTTTGT 436 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 502 36 100.0 30 .................................... TTGTAATATTTGGTAACTCTTCTTTTGTTA 568 36 100.0 30 .................................... TCCGACCATGTCAGTCCAACGGTATTTTGT 634 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 700 36 100.0 30 .................................... AGGGAGGAGAGAATCAATGCCGAATGCTGA 766 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTCCAAAACATCAACTGCTAGATACGATAACACGACAACG # Right flank : T # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 210-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAND01000049.1 Streptococcus agalactiae strain AB-22 NODE_54_length_210_cov_44.7444_ID_107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 209 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 143 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 77 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : | # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //