Array 1 3620475-3619469 **** Predicted by CRISPRDetect 2.4 *** >NC_013892.1 Xenorhabdus bovienii SS-2004, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3620474 29 100.0 32 ............................. GATCATCCAGAGAAAAAATTTCTGTGCGTAAA 3620413 29 100.0 32 ............................. GCTAAAAATAATGGCTAATGCATTTGATTTTG 3620352 29 100.0 32 ............................. TCTGTACCCAGACAGCCTGTTTCGCCATTACG 3620291 29 100.0 32 ............................. TCCTAACACGGCACTTTGAACGCGCCCAACGT 3620230 29 96.6 32 ............................A GAGGCGAATGACCGTCTGATGATTGGGTTCAA 3620169 29 100.0 32 ............................. AGAAATGTAGTGAGGGGATATCTCATCTGGAA 3620108 29 100.0 32 ............................. AAACTAATGAGGAAAATATCAAACGTGGGTTT 3620047 29 100.0 32 ............................. ACAGGGAAGAAGAAGTTAAAGGGCAGAATATA 3619986 29 100.0 32 ............................. CCCCTGTGTTTACTTCGGTTGTTCCGGCCATT 3619925 29 100.0 32 ............................. GCATTTTCAGAGGGGTTGCGGGTCGAAATCAA 3619864 29 100.0 32 ............................. TTATGCGACATTTGTGCCTGAGTTCATGTTGT 3619803 29 96.6 32 ............................T TTCGCTTTTTTCAGTTGGTCGGTCGCATTGGC 3619742 29 100.0 32 ............................. CTCTAGATCTTCCGCCAAATGTTGAACGTCAT 3619681 29 100.0 32 ............................. AGGCCCTACTGAGTTTTCACTATCGATACAAA 3619620 29 100.0 32 ............................. AACTATGACAACTGGAAACTGATTTTCCCTCA 3619559 29 100.0 32 ............................. CCATCCCATGTGATCTGCCATTAGATTGTCAA 3619498 29 93.1 0 ..........................T.T | G [3619483] ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.2 32 GTGTTCCCCGTAGGTACGGGGATAAACCG # Left flank : CGGCTACTGTAGCGTGTCTGACTACTGTGGGTCTGGTACTGCCAGTGATTGGTGAACTGGGTTATTCCGGTGCACAAATGGCGGCGTTGTCAGTGTGTATTGCTGGTGGTTCGTTGATACTCAGCCATGTAAACGATTCTGGCTTCTGGCTGTTCGGTAAGTTTACGGGTGCGACAGAAATACAGACACTGAAAACATGGACCATTATGGAAACTATTTTGGGTACTACGGGTGCCATTATCGGCATGATCTATTTTGCTATGCTGAGTTAAACTTTCTCTGAAACATCGCTAACGGCATTTTACTGATTGATTAAAATGCCGTTTTTTTTATATTTATTTTCGGGTTTTTCAATAAAAAACCTGATGGGTGTTTGCTGTGGGGATGGCGAGGTGATTTGAGTAAAAATCATAGAATTTCCCTCGGTTAATTTTGTGATTTAACGTGGTAGAATTTTTACGTCTAATAAAATATATTTAAAACAGACGGTTATATTTAGA # Right flank : GCTGAAACTACGGTTCTGCATTTATTCCACTGAATGTCTTTGCTTTCCACACTTTGTCATTCACTGCTCAATCAAACCAATAATCTGGCTATAAAGCGCTTCGGCACTGCGTTCATACCCTGCGGCGGAGAGATGAACATAGTCGGGACGAGCAAGGTTCTGCTGCTGCCAGCTTCTGACTGAACATGACCCACCCATAAACTCCTGCCAATTCCAGAACAGGGTGTGCTGCTGTTTGGCGACGGCCTGCTGAGCCTGAATTATGCCATTGAGCAGAGCGGGTTGCTGTTCAGCACAGCTTGCAGCAGTTTTGTTTTTCAGCGAATCACTCGGCCCAACCAGCAAGATAACCACTTCTGGCATGACCTTGCGAATTTCCTGCACTTTTGATGTCAGTTCCTTCTGATAGGCAACAAGATCCAGTGAATCGTTGAAGGCTTCATTAGTGCCATAAGCAAGGATTACCATATCCGGTTTCAGTTGAACCAGTGTATTGATCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAGGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTAGGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3628576-3628909 **** Predicted by CRISPRDetect 2.4 *** >NC_013892.1 Xenorhabdus bovienii SS-2004, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3628576 29 100.0 32 ............................. ACACAAATGAGTATCGATTTAGTGCATGCACA 3628637 29 100.0 32 ............................. TCCCAGTTTTCTCTGATCCAATAGTCCTTGGT 3628698 29 100.0 32 ............................. GCAGAACTGTCAAAGAAATGTAGCGCCATTCC 3628759 29 100.0 32 ............................. CCTTGAGCGACAAACATCCCATCTTTTATGGT 3628820 29 100.0 32 ............................. TGCAGTTCCAGACTCTGGATGGCAGATTTCAT 3628881 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGTAGGTACGGGGATAAACCG # Left flank : TTACCCAGTGGCTCAGCAAGAGCGGTAAATCGAGGCAGTTCATACTTGATTTGCGGCCCCAGTAAAATCACATCGGCTTCATTGATATACATTTCCAACTCCAATGCGGGCACTGCTTTAATGGCTACCTCCAGTTCCCTTCTTTCCGCTTCCGCCTGCATACGCTGCACCAACATGCTGGTAGACATCCCCGCCGCACAACACAATAGAATGGTTTTCATGATTTTGTTCTCTTTGCTGTTGTCTATTATGATTTCGTCTAATTCGAAGATGAGAGCGCTCTCATTTTGGTTAAGGCTAACAGGTTATTTTTCCGTTGCTGCGATAAGGTTCGCATAATAGATAAGCAATAGTTTAGAAAATGGGCAAAATGCGAGCAATGTTACAAATGATCGGTATGGTAAAAAATACGGCAGGAATTTGGCTGATTTAGGTGGTTAAAAAATGGTAGAATTTTGAAGGTCAAAAAACATTTTATAAAACAGATAGATGAAATTAGA # Right flank : GGATTCATATACAGGTCTTAAGCACCAATGGCTTATTTTAGATACAAAAAAACTTCATTTATGATTTGATAATCGTCGCCAAACAAATCACCAAAATCACGGATGAAGCTGATGATTGCTGTAAAGCACCAATTAATACAACTCATTGATGAGGATTCTTTGCAAAAGATTAAGTTAAAAAAACAATTAATAACCTATTATAAATATCTTATGGAATTTAAACATCACCTCGAACTTCTATATTTTTTGACTTTTAATTCTTTCTTTTTTATTAATATATTCTTAATTAAATTTATTACAATTAATAAATTTAACAACATATTAATAATCTATTTTAACTAAAAATAATTTCTTGTTAATATTATATAATACACAAAGTGTTTGATGTATAAGTATAAAATACACTTTAACACCTCAAATACAAATGGCACAAAAAAGAAACTTATATAAAAAATAATAAAAAATTGCATGTATAATGCAAGGCATTTAATTTATTAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAGGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAGGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3646437-3646891 **** Predicted by CRISPRDetect 2.4 *** >NC_013892.1 Xenorhabdus bovienii SS-2004, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3646437 29 100.0 31 ............................. GTTCAAATGTATACATTTTCACTCTTATTGT 3646497 29 100.0 32 ............................. GAGACTCACGCCATGTCATGACTGAAAAATTT 3646558 29 100.0 32 ............................. ATGATGCCACGTTACTATTCGCCATACCTAAT 3646619 29 100.0 32 ............................. TTTTCATATAGGACTCATCAGGATCAGCCAAT 3646680 29 100.0 32 ............................. TCTATTGAGCGTCCAGCACTGAGTTTATTGTC 3646741 29 100.0 32 ............................. GTAATGCCGGATTAAAAACGGGGATTGAAATT 3646802 29 100.0 32 ............................. CCTGCAATGGGAACATACTTCGCGGGGTCGTA 3646863 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCCGTAGGTACGGGGATAAACCG # Left flank : CCGTTGATCGAGGAAGTGCTCGCTGCGGGTGAAATATCCCCTCCACCACCGCCAGATGATGCCCAACCTCCCGCCATCCCCGAACCGCTCTCCATCGGCGATATTGGTCACAGGAGCCGATAACATGAGTATAACGATCGTCGTTACCGAAGCAGTTCCTCCGCGCCTGCGGGGGCGTCTGGCTATCTGGCTGCTTGAGATACGGGCAGGGGTTTATGTCGGTGATGTCTCGCAGAAAATCAGAGAAATGATTTGGGAACAAATCACAGAATTAACCGAAGCAGGAAATGCCGTTATGGCTTGGGGAACAAATACAGAATCAGGGTTTGATTTTCAGACGTTCGGTGAAAATAGAAGAGAACCAATAGATTTTGATGGCTTACGGCTAGTGAAATTTAAACCACTTCCTGAGGGTTAATTTTGATCGCGTTTTAGGCTTTTAAAGTGGTAGAATTTTTATGCTCAATAAAGTCATTTTAAAACAAATGGTTATATTTAGA # Right flank : AACAGCAGAACATATCTTCCCATAATAGCAAGACTCACTATGACTCAAACTCGTCATAGAGAAATTGTTTTCACTAAAGTCACTATACGAAATATTCAACTTTAGTTACTCATTTTCCAGCATTATTCGTTAACAGACTTCATATAACCTATGATAATCTACTGCGTCCTTCATTTTTCTTTGAGTTTATTATGACCTTAACTAACTTCAGCAAATTGTTAGCCGCTACACTTTGTCTTGCGACTTCATACAGCTATGCAGATGGTGAGCGCCCACTTTTTTCATTGACGATGGCAGAGTCTGGTGTATCGCAGACGAATAACGATGGGAGTTTATCTCATTCTACAAAATCAGAATCCCGCATTCTGCCGATTTGGGGTGATGAAGCGCGAGCTAAAGGCTACGATCTGCCTGAGCCATTTGGCGCAAGTTATGGTTATATGAATCTGCGTCAGGATATCATTATAGACAGCATTAAATTTCAATTTACCAATCCGCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAGGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAGGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //