Array 1 88245-90225 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGW01000004.1 Salmonella enterica strain BCW_5900 NODE_4_length_213978_cov_2.82655, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88245 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 88306 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 88367 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 88428 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 88489 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 88550 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 88611 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 88672 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 88733 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 88794 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 88855 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 88916 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 88977 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 89038 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 89099 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 89160 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 89221 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 89282 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 89343 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 89404 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 89465 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 89526 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 89587 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 89648 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 89710 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 89771 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 89832 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 89893 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 89954 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 90015 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 90076 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 90137 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 90198 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 106358-107834 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGW01000004.1 Salmonella enterica strain BCW_5900 NODE_4_length_213978_cov_2.82655, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106358 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 106419 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 106480 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 106541 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 106603 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 106664 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 106725 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 106786 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 106847 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 106908 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 106969 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107030 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107091 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107152 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107213 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107274 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107336 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 107397 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [107439] 107439 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 107500 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 107561 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 107622 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 107683 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 107744 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 107805 29 96.6 0 A............................ | A [107831] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //