Array 1 20218-20368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNWT01000029.1 Streptomyces graminis strain NRRL B-1570 contig29.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20218 29 89.7 32 .................G..GA....... CACATACGGCCGTACTTCGCGCGTTACAACGT 20279 29 100.0 32 ............................. ACGAGGCACGGATGGGCTCCGCCCAGTACGTG 20340 29 72.4 0 ..................C.GGG.AGGG. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 87.4 32 GTGCTCCCCGCGCCCGCAGGTTTGGTCCC # Left flank : GGCGACGTCCACATCGACAGCGGACGCAACCACGGAGAAGAGCCCCTCTGGTGACCGTCATCATCCTCACCACCTGCCCCGCCGGACTCCGCGGTTTCCTCACCCGCTGGCTTCTCGAACTCTCACCCGGCGTCTTCCTCGGTGCCCCCTCCGCCCGCATCCGGAGCATCCTGTGGGACGAAGTCCGCCAGTACGCCGGGCAAGGCCGCGCACTCCTCGCCTACCAGACCGACAACGAACAAGGCTTCGCCTTCGAAACCCACAGCCACCCCTGGCACCCCATCGACCACGAGGGACTCACCCTCCTCCACCGCCCCACCACCACCCCCAGTGCGCCGGCTGCCGCTCCCGATACCCCACCGCGAGGCTGGAGCAAGGCAGCCCAACGCCGCCGCTTCCGACGCACATAACCCGCCCAGAAACAGATGCCCCATATGCCCGACTCGGCGAAAGTGAGTAAAACCCGCCCCCACCCGCAGTAAAACCCCACGTCGCGCCCT # Right flank : CTTAGCCGTCGCTGCGTGGCTCGGTCCTCCGAGGCGACCGCTACCGTCGCCTCCTTCTTTCTGCTCTCACCGGCTCCCGTCCTGCGGTTCTGAGGGCGAGGCGGTGCAGCTGGAGTCCTCTGCGTCCTCAATCGCCGAGTGGCCTCGCGGCCCCGGTAGCCGGCGCTCGCGTTTGGTGCCGCTTGCTACGTGGGCCGGTATTGATCGGCCCGTGCGCGAGAGGCAGGGGCCCATGCGCGCACGGGCTAACGAGGTGATATCCCCTCTACCCTTCTCGTTGGCAATTGGAAACTTCCGTCAGGGTCCGTCTTCGACAGGGGGTGCACCGGGGTCCGTGAAGTACACCGCGCTCGGGGAGCGGATCAAGCAACTGCGGGGCCGGATCATCCAGAACGCCCTGGGCTTCCTGTCCGAAGCGCTTCGGGTCGCCCGCGCATCTGGGATGCCGGGGAAACACCCCGACGAAGCCGTTGTCGTGCTGGACGATGACCACGTGGGCG # Questionable array : NO Score: 3.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.37, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCAGGTTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCAGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36368-36096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNWT01000051.1 Streptomyces graminis strain NRRL B-1570 contig51.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36367 28 100.0 33 ............................ CCGGTGCCGCTGGAGCTGCTGTTGCCGCTGCCG 36306 28 100.0 33 ............................ CCGGATTCGCCGCTTCCCCAACGGCATGAGCTT 36245 28 100.0 33 ............................ CGTTGATCGTCGGACAGTCCGGACAGTTTTGGG 36184 28 100.0 33 ............................ CGCCTGACGCCTGGTCAGAACCGCAACTGTCCA 36123 28 96.4 0 .........................C.. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 99.3 33 GTGCTCCCCGCACGCGCGGGGTTGGTCC # Left flank : TTCGGCGCAGGCGGGGCGGATCGGCGTCCGGGGCTGCCTTGTCCAACCCGCAGGCGCCTCCGCGACGTGACGTCCGACGCGCATACCCATGGGTTGCCGCGCCAGGCGAAACGGAACGCGTCTCGTTCGCTCCTACCGGCCGAATGCGGCCAGCTCCACGAGCAGCTGCGCCATAGCCACCAGCAGCGCCCACCGGCACCAGTCCACACGGCGTCGGTCCGCGCCCAGCTACCCACCTCCATGATCCGTTCCCGGGACCGTAGAACGGGGCGCGAGGTACCCGGAGCGGGGTACCCACAGGCAGGCCGGATCGTCATACCGGAGGCTCACCCTTTGGATGAAGGGCTCGTCGGACTGGAGGCTGACCAGCCCTCGCAGTGGCCCAGCTGACACCCTTCGGCAGGGTTTCGACTCCTAATGGGAGAACGCCCGGAAGGTCCGAGTCGTGGGAAGTGGTTAAAATCAGCCCTCGACTGGCGAAACGCTGCTGGTCAGCCTCT # Right flank : CAGGTTCCGGACGTCCGCGTCGGTGATGGTGAAGTGCCGCCTGTCCCCGCATAGTGGCCCCGCCGGCACCACTCGGCGGGGCCATCCACATGGTCGGTGCGCTCCAGCACCACGTCCAAGCGCCCGCCCAGCCGCGCGAAACCTGCCTCGGTCACGCCGCGCAGGTGCTCCAGCTCGACGGCGACCGTCGCCTCTTCCGGTACCCGCATTCCTTCTGCTCGCAGAGCCGAAAGCAACTGCGTCCTGAACGGCACGTGCACGGGGGCGCTCGTCGCCGCTGACGACGGAGGTGACTGGCGCCGCTCGCTGGTGGCCGCGTGCACCGAGCACGGTTCGGGGATCGGCACCCCGGCCCTGTGGGAGGTGGCCGCGTCAGCGACCTGCGGCCCGCCGGCTTGCACTTTCCCGAAGGAACGCAGGGGAACGTGGCGGAGGGGCGCGTGCAGGGGCCGTCTTTCGGCGAGCTGTGGGACGGAGTGCGGGAGGCGGTCCTGGTGCCG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGTTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGCGGGGTTGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 84024-84357 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNWT01000008.1 Streptomyces graminis strain NRRL B-1570 contig8.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 84024 29 96.6 32 ..........C.................. CTCGCCGTCGATGACCTGACATGGACGTGGGC 84085 29 89.7 32 ..........C..C...........C... ACGCGCTGTGTGCCCGTGCTCCTGGCGGTGGT 84146 29 100.0 32 ............................. TGCGCCCCTTCCGCCCGGTGTGCAACCACCGG 84207 29 100.0 32 ............................. AGCGCGGTGCGGGGATCGTCGAAGGCGACGGG 84268 29 100.0 32 ............................. GATCCGCGTCTCCGGCGACTCCGGCCACACCT 84329 29 93.1 0 ..........C..C............... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGCTCCCCGTACGTGCGGGGATGGTCCC # Left flank : ACGCCGGCGTCGCCTTCCCAACGTCGTGCACCCCGGCGAGCCATACGGCCAAGGCACGGGCGTCGGCGAACCCACCGAGAAGGGCCTGGGCAACGAGGCGCTTCACCTGCTCGGGCAACCACCGGTCCCAGAGCAGCCCGGCCGTGGCAGCGCTGTCGGACATGTGCCGCCAGAGGGGTAGGTAACCGTCATCCGCATAGGACGACTTGGCCCACGCCGCGCGCGCCCCCGGGGACAGCCGCTTACCGAGCCGCCCCCGTACTTTCTCCCCCACCGCCTACCTCCGCTGTTCCCGGCCCCGTCACACGCATGACGCCGGGCTCGAACGCCACCCCAACCGGCAGTATGCGCACGCGCGGAGCAGTCGTGGGGAGAGTTGACAATATGGACCGGAACTACTCAGCCCCGCGTCCCTTTCGAACTGTTGGTGAGGTATGCACCATTCAATGAAAGTGAATCCCACGGCCACCGGCAACGGATAAACCCGCAGGTCACCGAGT # Right flank : CCTCCACGGGCCGGGCCAGCAGGGCAAGTCCAGACCTGCGGAAACGCTCCGGAGGAACGTTTCCGCAGGCCAGAACGATTCTGCTGGGTGGGGCGGGTGGGACTCGAACCCACGGCCGACGGATTATGAGTCCGCTGCTCTAACCGGCTGAGCTACCGCCCCGTAACGGCGCGCCGCGCACGAATGTGCGCGCCGTCTGCCGCAGCATAACCGTTCATAGGATCTGCCGCCCGCGGCGGGGGAGATCTACGCAGGTGAGGACCCCGGACAAGGGGTGAACGGTTCCCGCTCCCGCCGACTTCCGCGAAGATCGCCGGAAAAGGGCGGAAAAGCACCCGTCGGCTCCGCCCTCCCCGGCCGCCCCCTCGCCGCGCGGACAGCGCCGGCCGCATCACCGCGCACCGGCCCCGGCATACCACCGCGCACCGCCCCGGGCGTACGGCACCGCCCCAGGCATACGAAAAGGGCCCCGAAGGGGCCCTTTCCTTCTTGCTCCCGCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGTACGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3802-3651 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNWT01000074.1 Streptomyces graminis strain NRRL B-1570 contig74.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3801 29 100.0 32 ............................. CAGCGCATCAACCGGGTGAGGCCCTGCTACAT 3740 29 100.0 32 ............................. CACCCGCCCCTCCCCGCCCCGGTCACCGGTGA 3679 29 93.1 0 .........................TG.. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGGTCCCCGCACGCGCGGGGTTGGCCCC # Left flank : GGTACCGCTCCGCGCAGTGCCGGACATGATCAGCCGAGGCGGAGTGCGCTCGGCCAACGCCGTGGCCGCACTGCTGATGCTGCACCGTCTCCGGCTGAGCTGACCGGCCGGAGAAGTCGAAGATGCAGGACAGTCTTGCCGGGCACGCGGTGGTGGCATGGCTGCACCGGTCGTCGTCCATCCGCCCGACGTGCGGAGCGTCGGCCGTGCCCTGAGTGCCGGCCGCCCCCTCCTGGGCCGGCAGGCTTCGGCGGGCCGAGGGGGCGGGACGCGGGGCGCCTGGAGCGGGGTTTCCACAGGCAGGCCGGACAGTCATACCGGAAGCTCACCCCTGTGAATAACAGAAGCTCGCAGGGCCAGCCCCTGACGAGCCCGAAGCGGCCACGTGGCACCCTTCGGCGGGATTTCGACCGTACGAACGAGAAACACCCGGAACGTCCGAGTCGTGGGAAGTAGTTAGAATCGGCACTCGGCTGGCGAAACGCTGCTGGTCGGCGCCT # Right flank : GGGTGCGTGATGGTGGACCGGAAGCAGCAGGCCGCGCCCTGCTCCGGCTTGGCGATCGGGCGGACGGCCATGCAGACCTTCACGGGTCAGCGGTGTGGTTGACCCGCCCCCGGACCTTCGCTGTCACACCGCGCGGCCGGGGCGGGAGCTGTCAGGCCGCAGCCTCATGTGTGGTGGGCCTGGGCCCGTTAGGTGTTGGCCCAGCAGTCGCCGCGGAGTGCGGCGTGGGCCAGGAGGACGGCGGCACGCATCTGCACCACCGGGTCCGCGGTCTCGTCCGCCTCGACGGCGAACGGGCCCGCGGCTTCGTCGTGGTCGCGGGCGGCGCGGCGCAGCCGGGTGGCGAGTGCGAAGGCCGGCCCGGACACCCGGGGAAGAACACGGTTCCGTGCGTCCTGGGCGAGGCAGGCGAGGGCGTCGGCGCGGTCCTGCGCGCTGCTGGCCCGCCAGCTGCTCGTCAGGAACGGGGAACTGGCGGCGTCGTGGCGTCCGACGACGTG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCACGCGCGGGGTTGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //