Array 1 34287-33119 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMVN01000076.1 Pseudomonas aeruginosa SD9 contig00078, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34286 28 100.0 32 ............................ TGCAGAAGCAGTGCTGCACGATCGTTGATGTG 34226 28 100.0 32 ............................ AGGAACTGTTCGTGCCGCGGCACCCGTTCGCC 34166 28 100.0 32 ............................ ACCGTCTGGCCTTCCTTGGGCTCGGCTGGAAG 34106 28 100.0 32 ............................ TAGAGCGGGCTTTCTCGTTTCTGGAGAGCCCG 34046 28 100.0 32 ............................ TTCTTGCCGGTCACAGTTGCCGAGTCAGCCGC 33986 28 100.0 32 ............................ ATGCGCAGGTTGCAGAACACATCCAGCGCGTC 33926 28 100.0 32 ............................ GATCCGGCGATGGAGTGGAAGCAATACCAGTG 33866 28 100.0 32 ............................ TCGGTGGTGTATCCCTGCTGGGATGGCTTGCC 33806 28 100.0 32 ............................ TCTACGTCCGCCAATTCTCTTGGCCCGTTCGC 33746 28 100.0 32 ............................ TGGGTGGCCGACATCGTTGCGTCGAACTCGTA 33686 28 100.0 32 ............................ GCATGCTGTCCGGCCTGTTGATCGGCCCGCTG 33626 28 100.0 32 ............................ GCAACGCCGGCCGAAGACCAGACCATCACCGA 33566 28 100.0 32 ............................ TTCACCGTCACCCAGTCCTGGGTGGCGTAGAC 33506 28 100.0 32 ............................ TTGGCAGCTGTAGCCAGAGCCGGATGCGAAGC 33446 28 100.0 32 ............................ AGAGCGCTCTGGTGGACGGCTGGGTACGACGA 33386 28 100.0 32 ............................ CGTATCAGCGGGCCGCCAATGAAACCGTCGAG 33326 28 100.0 32 ............................ AGCGGCAAGTCGATTTCGCCGGCCGCTACCTT 33266 28 100.0 32 ............................ AACGCCCAGCGCCAGCGGGAGAAACGCCAGCG 33206 28 100.0 32 ............................ AGTTCGGGACACTGCTCCAGCAGCAGGACGCA 33146 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCAGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGACCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 55-1884 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMVN01000129.1 Pseudomonas aeruginosa SD9 contig00131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55 28 100.0 32 ............................ AATTGCTCCGGGGTCAGGCTGCTGGCGACCAT 115 28 100.0 32 ............................ CTGATAGCTGGAGGTCTGGAAAGAACTCCACT 175 28 100.0 32 ............................ TCTAGATAGGTGCGCTCGATGGCGTTGCCGGC 235 28 100.0 32 ............................ AGATGACTCCACCGACTGACCACTCATCAATA 295 28 100.0 32 ............................ AGTCTGGCGGCTCTACGTTGTGGTCAGAGCGT 355 28 100.0 32 ............................ TGAAGAACTACCTGGGCCAGGCCAAGCCCATC 415 28 100.0 32 ............................ ACACCACAGCGCCGAAATGGTTTGTCTTCTTG 475 28 100.0 32 ............................ GGTCAGTACCACTCGATCTGTGAGGTGAGCGA 535 28 100.0 32 ............................ GTACCCATGAGCGATTCGGCCCGAGAGGCCGG 595 28 100.0 32 ............................ TGAAAGCCATCATCGCGACCCTGTCGCTGAAA 655 28 100.0 32 ............................ TCCCTGAGGCGCGGGTTCGATGCTGATACCGT 715 28 100.0 32 ............................ CAGGAACTCAACGATGAACGCGACCAGAACGC 775 28 100.0 32 ............................ CAGTACAGCCCCGCCCCCCATCGGTAGATAGG 835 28 100.0 33 ............................ AATCTGAGCGGTAACGTCACCCTGATCGACCCA 896 28 100.0 32 ............................ TGAGCCTGACTCTTGCCGAGCAGGTCCGCGAG 956 28 100.0 32 ............................ AAACGGATTTCGATCCCACTGATGGACGGTGA 1016 28 100.0 32 ............................ ATTTACAACCGTAAAACGAAAACCACGGAGTC 1076 28 100.0 32 ............................ ACGCAACGACCGTCCGCCGTCGCGTCGCCGCC 1136 28 100.0 32 ............................ TGGGCGAGATCGGCGCGTAGCCGTAAGGCGAG 1196 28 100.0 32 ............................ TTCCCCGGCGAGATCCAGCCGCCCCAGGACGG 1256 28 100.0 32 ............................ AGAACGAGCCACGGGTATCGGCCTTCGACTCA 1316 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 1376 28 100.0 32 ............................ AGTTGGCGAGCTGGGCAACGTTGCTCGTCGAA 1436 28 100.0 32 ............................ ATGTTGTTCCTGGCCTCGGCGATCTTCTGGTC 1496 28 100.0 32 ............................ CGGATGAACTGCTCAGTGTTCATGCTGCCACC 1556 28 100.0 32 ............................ AGTTCTTCGTCAAGCACGTAGGGCGACTCGGG 1616 28 100.0 32 ............................ ATCACCGCCTTGACACCGACGAAGGCAACAGC 1676 28 100.0 32 ............................ ATGACTATCTCGTCGCTTGAGATTTGCAGCCC 1736 28 96.4 33 ....C....................... TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 1797 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 1857 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11517-10409 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMVN01000129.1 Pseudomonas aeruginosa SD9 contig00131, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11516 28 100.0 32 ............................ TTTGCTCACAGACTTGAACCATCCAAGTAACT 11456 28 100.0 32 ............................ TATGCCAGCGGCAACAGCACGCGAGGCTTGAT 11396 28 100.0 32 ............................ ACTAGCAAATCTTGGACGCGCTGGTTGAGGTT 11336 28 100.0 32 ............................ AGGCGCCCCCGGGCGCGGCCAAGCGCGTAGGC 11276 28 100.0 32 ............................ AGCACGCTATCTGCACATTCCCACCGGCATTC 11216 28 100.0 32 ............................ TTCTTGTGGGCGAGGGCGGCGGGCTGAAAAGT 11156 28 100.0 32 ............................ ATGATGAGGACGATACCCTCATCTCGGCGTAT 11096 28 100.0 32 ............................ TGGATGGCTCAAAGCTGTGAGCAAGGGCCGGC 11036 28 100.0 32 ............................ AGATGGCGCAGGCAAGGGCAATACAGACGGTC 10976 28 100.0 32 ............................ GTAAGAAGGCCTCGAAGATTTTCACGCTCGAT 10916 28 100.0 32 ............................ AAGCTGCGAATGTCCCCTAGCCGGTACAGCGG 10856 28 100.0 32 ............................ ACACTGACAGCGCGATCAAGACTGAGGCGAAA 10796 28 100.0 32 ............................ ATGGAGCTGGGCAACGTCGTCAGCACCCAGGT 10736 28 100.0 32 ............................ TGTCGGCCGGCGCCGTGCGCCAGTCCGGCCAG 10676 28 100.0 32 ............................ TCCGGCGCACTGCGGCAATCCTGCCGGCCGAG 10616 28 100.0 32 ............................ TGTTCGCCCGAACCTTCGCGGACCGCTTGTCC 10556 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 10496 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 10436 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGATTAGAGATAGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //