Array 1 126617-128272 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYTB01000015.1 Kurthia huakuii LAM0618 Scaffold3_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 126617 33 100.0 33 ................................. TTCGCTGTTTTCCTTAAACTTGCTTAAACGTTT 126683 33 100.0 34 ................................. GTCTAAAATGGCTCCCTGTCCAATCGCCAAAGCG 126750 33 100.0 35 ................................. ATACGCTCGTAAGTTGCTTTGCTCAACACCCAAAC 126818 33 100.0 35 ................................. AGAAGGTTTTAACTCCGTTTCCGAACTTGTTCCCC 126886 33 100.0 35 ................................. TAAAACATTTACACTATGCGGTATATCTCGCATGA 126954 33 100.0 34 ................................. ACGGTTATCCAACACGAAGAAAATGAAGCGGTTT 127021 33 100.0 35 ................................. TCAACTTGATTCATAGCACCTTTAGCCATGTTATC 127089 33 100.0 35 ................................. TACGACGAGCATATTGGCAAACGTAATTTTACGAC 127157 33 100.0 36 ................................. AAAGGGATGGATAAGCCAGCAAAACTCAAATCAATT 127226 33 100.0 34 ................................. ATTTCAAAGGAATGAAGGCGAAGGGCCCAACCAT 127293 33 100.0 34 ................................. CTGTATACAATTTGCTGCTTTGTTTGTAGCTTGG 127360 33 100.0 34 ................................. GGCTCGTTGTTTCCTATCGCTTACTTAGATTTTG 127427 33 100.0 34 ................................. AAAAATAAAAATCTTATAGCCTTTGACACTACCT 127494 33 100.0 34 ................................. GCTTTGACTTAACCTTGTCTTTTTTCTAGCTGCA 127561 33 100.0 36 ................................. TATCGATAAGTTTTTATCGCGTGTTACGAGCTTCGG 127630 33 100.0 35 ................................. CATTAGACGATCAAGGATAGCTGATTGATATTTAT 127698 33 100.0 35 ................................. AAAATGAACGCACAAAATTTAATTGATAACGTAGC 127766 33 100.0 35 ................................. GCCGCTTAGTAAAGTGCCCGGGACTCCTTATCACA 127834 33 100.0 33 ................................. AACTAACAGAGGTGTAACGTTTGAACTCAAAAA 127900 33 100.0 35 ................................. CTTGATAGCTTCGATGATAAGGTCTTTGTTATAGT 127968 33 100.0 34 ................................. CTTTGTCATCATCTTCTACGAGTTCAAGCGTTGA 128035 33 100.0 34 ................................. AGTTATTGTTTCTTTGTCTACATTAGGAATATAC 128102 33 100.0 36 ................................. ATCATCTGTCTGCTTATTTTTGTAGTATTCCCAATA 128171 33 100.0 36 ................................. ATCATCTGTCTGCTTATTTTTGTAGTATTCCCAATA 128240 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 25 33 100.0 35 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : TCGGTAGAAATGGGGTCAAAAATGAATCGTAACGGGCATTTTTTGTCCGCTTTTGAGGAGGCCACGTTACAAAGTTGTCGTAACTATCGCCACACAAGTAGTAGTTATTTGAGAAAATGACAACAATCAGCAAATGATTCGCTTTTTTCTAGGCGTATCTACTTAAACGTGACGCATATTCAGAAATATGTCGTATCGAAAACACGCTTCTTGAGGTGAGAGCTAATTTGTGAGAGGGGATTCGATTTTTAAATGTTACTTAGTGGAGGACTCATATTGCGAAAGCCATTTCTTCGGAAGAGGTTAGGAAAAAGAAGGCGTACATTGTATAATAGGTAAAAAGGTGCGAATAGGAAGCGCTCATATATTTCCTGGTGTATTCGCACCCGTTTTTTCACTGTTTAAAGAAAGAAATCATGTTTGTTCTCTTTAAATAGAAAAAGTTTAGAAAGAAATAGTGAATTCATGATAAATTCAGCTGAATTTATTAAGCGTTCGCC # Right flank : TTTTTAAATCCTCTAACGAAAATGTCTCCGCTGGTGTCTCACTCTTCATTTAAAACGAGGATAACAGTTTTGTTTCTTGAAAAAACGCCCGAATGCATCCACATCCACAATCTGTTCACAGGAAGTTTGTAAGGCTACGCGATCTACGTTGCGTAACCACGCGGTATCATCTTGTTTCTAAATTTGGTCAGTAGTTTAGACATACTGGAACGATTTAACCCTTTTCCTTCTTTCTTATAAGAAGTATTCCAACGTTCAAGGAAATGGTTGTACACAAAACGGCAATGACCATGTGTTTGATGAATGAATGCTTGTTGGTCTTTAGTGGGGTAGATACGGAATTTGTAGGCTTTATGTGGCATGACAATCACCTCTTTCTACTTACTTATTTATGCCCTTGAGACTGAATGTATTTTTTAATCGTTATAAATGTCAACATGGTTAGGTACATTTTTGCGCATCTAAGTATGTACAATCATGCTCATAATGGCTATCACTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: F [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 12221-12768 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYTB01000013.1 Kurthia huakuii LAM0618 Scaffold2_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 12221 29 100.0 35 ............................. GCATTTGAAAAGAAAAAAGATGAAGCGCAAGGAAT 12285 29 100.0 36 ............................. ATTTATGATACACGCTATCCAGATAAACTAATCGCT 12350 29 100.0 36 ............................. GATAATACGCTTCCTTCGCTTGTGTTGTTGTCACCT 12415 29 100.0 36 ............................. CCTTTCAATCAAAATGTAAAGCATCATTGGCGGCTA 12480 29 100.0 37 ............................. TAATCTTTTTATCATCTGGGGAGGTATTTATATTTGC 12546 29 100.0 36 ............................. ACTATCCGAGGGCTTTATATACGAGAACGGACTTTC 12611 29 100.0 35 ............................. GCACGTTGAGGACTAATAAAAGTAGCTTCAACATA 12675 29 100.0 36 ............................. AGCGTTATGTCGTGCAAGTAGGTTAGAGCATGCAGA 12740 29 93.1 0 .......C....................A | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.2 36 GTTTTATTTGAACATAGTGGGTTTTAAAG # Left flank : GCGAATACGCGTCAATATTTTTGTAGATTCAAGCTTTTTAGTTGCAGGTAATTTTTTACCTAGTAGTGCATTTAATAATGCTGTCATAATCGCTATTAAAATGAGGCGTTATTGACAATGCTGATTTCCCAAATTTTATTTAATCGAGTTAATTTCATAACTCCAAACCCTTGTCTCCCAAGGGTTTTAAAACAATAAAAAATGGGCACCTCCCCAAGATGGTATAATTTAAGTGACCAAACCAAAATTATCCAAGAGGTGAATGCCCTATGACTATTGTAAAACAAATGCGTCTATTTGACATCCATGAATTAATGGAAATGGAAAGTTCTCGTCGTTTCGATGCGATTTTAGCCACATTCGACTTACAACCGATCTTACAGCTATTTCGTAAAACGACGATGTATGGCGCACCACGAGAATTAAACTATGGTGCGATGGTGCAGTCACTTGTCATTCGGATTGTCTAGTGTATTATTAATGTATGATTCATGTTGCCG # Right flank : ATACGTTATTATCCGCAGCACATCAGACTAACATCTTCACCAAATGAAATCTCAGCTTACATTTTATATAAACCCCTCGCTTCTAAATAATTTTTAAATTAGCTGCAGCTTCAATCAAATTCACATGAATGCTGCTTTTTATATTGCGATTTTTTCATAGACCATTCAAAATTTCAATTTCTTTTTTAAATCCCCTCTCACAAATTAGCTCTCACCCCAAGAAGCGTGTTTTCGATACGACATATTTCTGAATATGCGTCACGTTTAAGTAGATACGCCTAGAAAAAAGCGAATCATTTGCTGATTGTTGTCATTTTCTCAAATAACTACTACTTGTGTGGCGATAGTTACGACAACTTTGTAACGTGGCCTCCTCAAAAGCGGACAAAAAATGCCCGTTACGATTCATTTTTGACCCCATTTCTACCGATAACGGGCTTTTTCCGCACAAACACTTTGCTAGATCGAGTGCAGCGTGTCGCATTTTTATTTTTTTGAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTTGAACATAGTGGGTTTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 55365-56753 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYTB01000013.1 Kurthia huakuii LAM0618 Scaffold2_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 55365 33 97.0 35 ...........T..................... ACTGGCGGCTATCATGTATCGATTCAAAAATCACA 55433 33 97.0 33 ...........T..................... TGCTTTTGCAGTTGTGCCGCAAGCATATTGTTC 55499 33 97.0 33 ...........T..................... CAAAAATAACACTAGCGGTTATCCAGGTGTAGG 55565 33 97.0 34 ...........T..................... TTTAGTGTCCCATTACCGACACCAAGGTTAGCTA 55632 33 97.0 34 ...........T..................... ACTTCTGTGATTGGCGATTGCATTGTTAACGGTT 55699 33 97.0 36 ...........T..................... TGGATGTTCAATATAGGCTGGTGAAATTGTGCGTTT 55768 33 97.0 35 ...........T..................... ACCCGACCATGCAATGCATGAATCTTGATTTTCGA 55836 33 97.0 35 ...........T..................... TCAACATCAAAGAATTATAATAGGTTTATCCTACC 55904 33 97.0 36 ...........T..................... AACTTTGATGACGTTTTTGCATAATGTGTCAACGTG 55973 33 100.0 34 ................................. AGCAACCAGTCCGCTATCTAAGCCGCGCTCTGTT 56040 33 100.0 37 ................................. CGAAGACAGGATTGTTGCAAAACACCGTTTTAAACAA 56110 33 100.0 34 ................................. CATTGGAAATTTTCGGAAAGCAAAACTCTATCTT 56177 33 100.0 36 ................................. AAGTAACTTCGCGCCGAGCGGGGCCATTCCGACTCC 56246 33 100.0 36 ................................. CTCCATCGTGTAAATTGCTTTTCGTTCGAATTGTTG 56315 33 100.0 35 ................................. GACATCTTCCTTGCTGTTGACGAAAAACGGCTCTA 56383 33 100.0 35 ................................. ATTAATAAATGAATAATAGGTAAGAGCATACTAGC 56451 33 100.0 34 ................................. TAATACTACAGGTGTACCATCTTCGAGCACTAAA 56518 33 100.0 33 ................................. TGCTTCAACTTTTGTTGTATCTGCATTTCTTTT 56584 33 100.0 33 ................................. CACGTATTGTAGACTTGCTCGATTTGCGCCCGT 56650 33 100.0 36 ................................. TTGATTCGATATAGCTTTGAAAATCTTTATATTATT 56719 33 84.8 0 ...........T.........CAC....T.... | TC [56749] ========== ====== ====== ====== ================================= ===================================== ================== 21 33 98.0 35 GTCTCACTCTTCATTGAGTGAGTGGATTGAAAT # Left flank : TCGGTAGAAATGGGGTCAAAAATGAATCGTAACGGGCATTTTTTGTCCGCTTTTGAGGAGGCCACGTTACAAAGTTGTCGTAACTATCGCCACACAAGTAGTAGTTATTTGAGAAAATGACAACAATCAGCAAATGATTCGCTTTTTTCTAGGCGTATCTACTTAAACGTGACGCATATTCAGAAATATGTCGTATCGAAAACACGCTTCTTGAGGTGAGAGCTAATTTGTGAGAGGGGATTCGATTTTTAAATGTTACTTAGTGGAGGACTCATATTGCGAAAGCCATTTCTTCGGAAGAGGTTAGGAAAAAGAAGGCGTACATTGTATAATAGGTAAAAAGGTGCGAATAGGAAGCGCTCATAAAATCCCTAGTGTATTCGCACCCGTTTTTTAACTGTTTAAAGAAAGCAATCATGTTTGTTCTCTTTAAATAGAAAAAGTTTAGAAAGAAATAGTGAATTCATGATAAATTCAGCTGAATTTATTAAGCGTTCGCC # Right flank : TGATTCGTGGCTTTTATAGTTAATATTACGATTCATAAAAGTACCCAAGAAAAAGTGTTATCGGTATGTAATAGCAGGATTGATTTTAATATAAAAAATAATTGCAGAAATTAATTATCTTTAAAAAATTTTTCGAATAATTTAAAATCAACACCGTAGTATTTTTTATACGGTGTCTTTTTTTCGCTCTTTTCGTCCGGAAGAACCTGTTTTTTTACAATAATATAGGACTGTTTGTTTTATTGGACATAGATAAACATACAATGGAAAAGTAAATTTAAAATATATTATTAATAAATAATGATATATAATTATTTCTGGTAAATAAAATTAGTCTTATGTAATTATAAAAATAATTCATTGATGAGTTCTTATATATAAGGAGATTTTTATTCAAATGAAAAAAATTATATCAAAAAAGCGTTTAAAGGGAATCATCCAGTCGTATATGGAGCGATATGATGAGGATCCCTTTTGGGGTGGTGAATTACAGTTTTTAC # Questionable array : NO Score: 9.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTCATTGAGTGAGTGGATTGAAAT # Alternate repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 95415-94062 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYTB01000013.1 Kurthia huakuii LAM0618 Scaffold2_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 95414 35 83.3 29 A....T.A...-.......A..T............. TAATAAGTTTATTTACAGCATGACAAAAT T,CT [95396,95399] 95347 36 100.0 30 .................................... ATGTGGAATGGCCGATGATTAAACGGGATG 95281 36 100.0 30 .................................... TCATCGCAAGCACCTTGTCGTGCGGTAATA 95215 36 100.0 30 .................................... AATAAGTAATCAGTTGATACACCAAAGAAA 95149 36 100.0 30 .................................... ATTTGCGTAACGGTTACCATAGCATTTTCA 95083 36 100.0 31 .................................... GACGTATCGTGCGAAAGATGGGCAAAGTGAA 95016 36 100.0 27 .................................... GAATTGTGGACGTTCTTTTTTAGTACC 94953 36 100.0 30 .................................... ACTAGAATCAGCATTGGTGCAACGTAGACA 94887 36 100.0 30 .................................... TCCGCTGTCGTTGAGTCGTACACACGCACG 94821 36 100.0 30 .................................... TTAGAAGAAAAAGTAGATAAGAAGGTCGGC 94755 36 100.0 30 .................................... GGTAAACGTAGTGCAACGATGTACGCACTG 94689 36 100.0 30 .................................... TCGAAACCCTCTACATTAACATTAGCGCCG 94623 36 100.0 29 .................................... GTGTGGACGAAAACGGCGTTTATACAGTT 94558 36 100.0 30 .................................... TCTAGCTACTCGCCATAAACCACGTACAAT 94492 36 100.0 30 .................................... GATGCGGTAGCGGAAGTGTTTGGTAAAGAT 94426 36 100.0 30 .................................... TGATTGGCTGACTGCTGCGGCGTATAAACA 94360 36 100.0 30 .................................... ACCGGTCAAGTTGATAAAGGGACCGTTTTA 94294 36 100.0 29 .................................... TGTCATAGCTTTATGTGGATTATCTTTTA 94229 36 100.0 30 .................................... CCTTATCTAGCAATCACAGTATAGTATTTG 94163 36 100.0 30 .................................... ATTCAGAACTTTGTTGAATCACCGGGCTTT 94097 36 72.2 0 .........................ATAAAC.TTGT | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 97.9 30 GTTTTACTACTATCTAAAATTACATTGGTCTAAAAC # Left flank : AAATGCTCCAGTATCGTCATAGAGCACGCTAAGCGGTGTCCACGGTGCACAGTTTGAAGCGAGCGTCGGCACGACAATCACTTGCTTATGCACTTCATTGGCCACAGCCTTCGCTAAATCGATGACCTTTCCGCCACCGACACCAATAATCGCATCATAATCGCCCATCATAGCCGTCACACGTTCAATTTCAGAAAATGAACATTCGCCGCCGTATGTATAAAGCTCCGTTTGAACATCCGCCATCGCTGGCCAAAATGCTTCAATCGCCGCCCATGATTTCGTTCCGGTCACAATCAAGGCACGCGCAATACCACGCGCCTCTAATAAGCTCTCTAACTTTTTCAATATACCATCTTCTAAGATGTATTCACTTGGTGCTGCATGTACATGAATTGTTTTCATTGCTAAACCTTCTTTCTATAGTTATAGTATAAAACGAATTTTAAAGATTTTGTAGGTGATTTTTCAGAAAATTTGCGAAAAAAAGAAGCTGAATT # Right flank : AGTGCTATTAGCTACTCTTAAAAAAATCAAAAATGACTGCTCTGAATAAACTGTCTTAATTTCTTACAAAGTAATGGATTTTGCACAATAAGTTCTTCATACGCTAAAGAAATGGCGAGCTGATTCTTTGACAACGAATCGTTTTCTACTTCTCCTAATAAGTCTAATTCGGTTAGGAACGCTGTTAAATCAAAACGTTCCCGCGATTTTTTAATAAAATGCACATGTTCTACAGGAAATTGCATCAGCCACTCTTTGCTTTTTGTAATACAAATAATCGTACTTTTTGTATTTTTCAACATCTGCGCCCATAACTCTATTTTCTGAATATCAATATCATTTTCAGGAAAATGATAGATGATAATCGATGGTTTTCCATTTGTAAGCGAAGTCCATACTTGCAGAATAAATTTAAGGCGAGAAAAATTGGTTAATGGTTCTTCCATTTCTTTTATATCCCATTTTATATATTTTTGCAATTGTGTCAATTGAAATTCTTC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACTACTATCTAAAATTACATTGGTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //