Array 1 160593-159606 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEG010000005.1 Acinetobacter nosocomialis strain AC25 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 160592 28 100.0 32 ............................ TAAGTTATTGATTTAATTGACATATTATACAT 160532 28 96.4 32 T........................... ATCAGTTCGCCCAGTACCACCGCAAGTCTTAG 160472 28 100.0 32 ............................ TGTTCACCCTCAAGTTGTTTTTCATAACGTAC 160412 28 100.0 32 ............................ AGAACCAACTTCAACTACAGCTGCAACAACAA 160352 28 100.0 32 ............................ ACTTACAAACACCGCAGCAGGCTCTTGAATTT 160292 28 100.0 32 ............................ TTGCTAATGTTCTTAATATTTTTTAACTCTGA 160232 28 100.0 32 ............................ TAATCTGTCCGCAATTTCGCCATTGTTCTTAG 160172 28 100.0 32 ............................ ATTCAAAACGTTCAAACTTCTCAACTGCTACT 160112 28 100.0 32 ............................ GACATAAAGGGTTATTTCAAGCGCATACAGAT 160052 28 100.0 32 ............................ AATCTCAGGACACAAAGCACCAGCTCTTTTGA 159992 28 100.0 32 ............................ AGCATCCATTGTGCTGCCGTATCGATCCAAGA 159932 28 100.0 32 ............................ ACCCCAATTGAACGAATCATGTTTTTGTTAGC 159872 28 100.0 32 ............................ ACTGGGTGAGCCAATATCCCTACTACGAAGAA 159812 28 100.0 32 ............................ TGTATGATTACGAGCTTTCCACGCAATAGTTG 159752 28 100.0 31 ............................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 159693 28 82.1 32 A..T........TC..T........... TTATCTTGAACCAGTGAAGCCGCGTTTTTACT A [159688] 159632 27 82.1 0 ...TC.......T.........C.-... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 97.7 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGATATAAGGTAAATCAAGTGCTTGTTGTTTACTTAAACGGATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACATATTATTTGAAAAATGAAAGTATTGAAGGAGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCACAAATTTAGCCTAAGACGATTAGGTTATATTTTTAGGAAATTAGAAAAATTAATATAATTCAATAAATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : TTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAATTATGCATGTCATTCTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGATATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTGCGAAGAATGAAGCTTGCATGGGTTGTAGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGGTCAAAGCAAGTAGCTTGTTGGCGGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCATCCCAACATTTTCAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 165682-169612 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEG010000005.1 Acinetobacter nosocomialis strain AC25 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 165682 29 96.6 31 ............................C CTAAAATGCTATTCACCTCGAGCTGTTATTG 165742 29 96.6 31 ............................A CAAACGCACAAAAATGAGATAGTTCGTCTTA 165802 29 96.6 31 ............................A TAAGCCTTAGGACGAATAGATGCACCATCAT 165862 29 96.6 31 ............................A GTAGAAAGCGTCCATCGCATTGTCAAACTTT 165922 29 100.0 31 ............................. AATCGTGGCTGGTCAATGACTCGCGACAAAC 165982 29 100.0 31 ............................. GATACGAACAAGCCGTATGAATGGGTTGATT 166042 29 100.0 31 ............................. GTGGCATTTGGAACAGGCTTAAAAATATAAG 166102 29 100.0 31 ............................. AATGGTGCAGTCCTAATTTATGATGAATGTC 166162 29 96.6 31 ............................A ATTAATTGGTCGACGCCTTTTGGAACTATTA 166222 29 96.6 31 ............................A ATTCGGATCTGATTAACTGGACTGTCGGTCT 166282 29 96.6 31 ............................A TTAAAATCCACTCACGCTCACACCCAAGCAG 166342 29 100.0 31 ............................. ACCACTAAAACTAAATTCATCAATTTCAATT 166402 29 96.6 31 ............................A ACCACTTCCATTTCTTGGCCTAGCCTTTCTA 166462 29 96.6 31 ............................C CAGGGTGTCCAGTGTTCCATGCTTTTAATAA 166522 29 100.0 31 ............................. TGATGTGTGTCTTGGTGCTCATCCTGTTATC 166582 29 96.6 31 ............................G AATCCATTTTTTCCGCCAGAGTCTCCACCAC 166642 29 100.0 31 ............................. GCAATGTTTTTGGTGTACATTGTACTTCCAT 166702 29 96.6 31 ............................A ACGACGCTCAGGATGGAATCTAAACTCCTGC 166762 29 100.0 31 ............................. TGATCGTTACCAATCAAATCTGATTCAGAGC 166822 29 96.6 31 ............................A AAACCCTTCATCAACTCTATTGTTTAAAGCC 166882 29 100.0 31 ............................. TTAACAACAAGAGGACGGCCACGCTCATTGA 166942 29 100.0 31 ............................. ATTGTCAAAAGAGCGGGTGCTTTGTGTCCTG 167002 29 96.6 31 ............................A TTAGTCATGGTTGAATTTGTGGATCACGTGC 167062 29 96.6 31 ............................A TCTTATCCCGCTAAATCCCACAATTATCTCA 167122 29 100.0 31 ............................. GCCGCAACAAAACCCTCTGTATCGCCTTTTT 167182 29 100.0 31 ............................. TTTGCGGCTTCACGTTGTGCACGTTCAGATC 167242 29 96.6 31 ............................G TTGTCTTGATTCTGAAGACGTCGCTCTTCTT 167302 29 96.6 31 ............................A TGACACTTAATGATGGTGAGTTGGCTTCAAA 167362 29 100.0 31 ............................. TCTGGCCAGTCTCGGTTGGTCCCCAGTTATA 167422 29 89.7 31 ...AC.......................C CGTTCTTCTCGCCGATATACGTCAATATTTG 167482 29 93.1 31 ...AC........................ AAAGGGAAAATTGTTTTTCAGCTTCGGTACC 167542 29 93.1 31 ...AC........................ CAATAATTGCACGCAAAAGTGCATCATTATT 167602 29 86.2 31 ...AC.......CC............... TCCCAGCTAAAATAATTCTGCGTTAGTTTGT 167662 29 79.3 31 ...AC.......CC......C.......A CGGAAGACCGCCACCAACAGCCGAAGCAGCA 167722 29 89.7 31 ...GC.......G................ GTTTTGCGCGTAGTGCGATTTGTTTTGCATT 167782 29 89.7 31 ...GC.......................G CTAATCAAAAATTACGCCGTGCTACTGGTGA 167842 29 79.3 31 ...GC......TCC..............A CTTCAATTGATACTGGCTTTGTAGTTTTAAT 167902 29 86.2 31 T..GC.......G................ TAAATATAAAAATGGGTGTGCCACTTTTTCA 167962 29 89.7 30 ..C.G.......................C TAAAGGCTGGACACGAGGGGCATAACTATG 168022 29 82.8 31 ...AC.......CC..............A CCAGCTCGCAGCCAACCTGAAGCTGGAGCTT 168082 29 86.2 31 ...GC.......G...............A TGTAGTCCGCAATCGAACCCATAACCGCTTT 168142 29 89.7 31 ....G.......CC............... GATTGCTCAGGTAAAAATACTGTTTCAGAGC 168202 29 89.7 31 ....G.......CC............... AGCACATCACGAGCAACCGCTTGTGTAATGT 168262 29 89.7 31 ....G.......CC............... ATTTGAATTAATTAAGTTTCAACGTTCTAAC 168322 29 86.2 31 ...GC.......G...............A ACTATTACGACAACATCAACCAGCAGCAAGA 168382 29 89.7 31 ...GC.......................A CAACTTTTTAAATTTGAATTTATTTTAGCTC 168442 29 93.1 31 ....G.......................A TAATGGTCATTTTGGTGATTGAATTATTAAT 168502 29 82.8 31 A..TG.......G...............A CATCTGTATGCAGATTTTGCTGCGTCCTTAC 168562 29 89.7 31 ...AC.......................A ATTACTCCGCCTGATCCTAGTGATCCTCCGG 168622 29 93.1 31 ...AC........................ TAAAGCGTATATATAAGCGTTTTGATAACCC 168682 29 96.6 31 ............................G GGTGTGAATCAATGCTGGATCCACTTAGCAA 168742 29 96.6 31 ............................A TTTTCGGTAAACGGCGCTGCTAACGCCGTTC 168802 29 96.6 31 ............................G CTTTGGTACGGTTATTTGTGCAAAGGATGAA 168862 29 96.6 31 ............................G CTTTGGTACGGTTATTTGTGCAAAGGATGAA 168922 29 100.0 31 ............................. GTATCATTTCACGTTCAGGAATATACTCAAT 168982 29 86.2 31 ...AC.......CC............... ATACTGGTCGTATTACGGATTTCCGAAGACC 169042 29 89.7 31 ....G........C..............A CTTCGACAAAACGCTCAAAACCTAAGGGCTT 169102 29 79.3 31 ...GC....T..CC..............A GCTGCCTTCTTTTAGCATTGCATCATAAAGA 169162 29 89.7 31 ...GC.......................G TGTTGATGTTGTTGTTCAGATCGTTTTTGGT 169222 29 79.3 31 ...GC....T..TC..............G ACATGCGAGCTTTCATTTAAATGTGTCATCA 169282 29 89.7 31 ....G........C..............A TTAAAACATTTCCATATGAGCCTTCCTCATT 169342 29 86.2 33 ....A......TCC............... TCGGATCAGTCCAGTCATCACATCCTCGTCAAT 169404 29 89.7 31 T..A........G................ ATCATTGCGCGACAGAACGCATCAATTAATG 169464 29 82.8 31 ...GC.......CC..............A GATCTATGCAAGATTTATTGGTCTACATTAG 169524 29 89.7 30 ...TG.......................C AAGCTGATGCTTCCTTATAGTTACAGTCAG 169583 29 86.2 0 .G..C...................AT... | G [169587] ========== ====== ====== ====== ============================= ================================= ================== 66 29 92.9 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGATACTATTGCTGATATAGCCAACAGCTACCTTGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGAATGGGAGTTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGCCTAGTTTTTGACCTAGCGGACCTAGTGAAAGATGCTTTTGTGATGCCACTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTTCGAATGCAACTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGATATATGTAGTAAAATTAAATAAAATCATATATTTAATCTAAGTACCTCTTAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGGTTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-48] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //