Array 1 41289-39429 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOET01000003.1 Escherichia coli strain MOD1-EC5288 MOD1-EC5288_3_length_311905_cov_155.09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41288 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 41227 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 41166 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 41105 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 41044 29 96.6 32 ...................T......... CTGCGCGACCAACGGGAACAGGGCAAATGTGA 40983 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 40922 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 40861 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 40800 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 40739 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 40678 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 40617 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 40556 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 40495 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 40433 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 40372 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 40311 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 40250 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 40189 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40128 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 40067 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 40006 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 39945 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39884 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39823 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39762 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39701 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39640 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39579 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39518 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39457 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67264-66991 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOET01000003.1 Escherichia coli strain MOD1-EC5288 MOD1-EC5288_3_length_311905_cov_155.09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67263 29 100.0 32 ............................. AGATTTGTAGAAAAATAGTCATTCTCTGCCTG 67202 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 67141 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 67080 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 67019 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCATTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //