Array 1 107559-106082 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYO01000017.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM2567 BCW_8421_1__paired__contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107558 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107497 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107436 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107375 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107313 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107252 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107191 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107130 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107069 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107008 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 106947 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 106886 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106825 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106764 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106703 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106642 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106580 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106477 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106416 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106355 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106294 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106233 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106172 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106111 29 96.6 0 A............................ | A [106084] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125672-123691 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYO01000017.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM2567 BCW_8421_1__paired__contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125671 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125610 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125549 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 125488 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 125427 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 125366 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 125305 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125244 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125183 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125122 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125061 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125000 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124939 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124878 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124817 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124756 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124695 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124634 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124573 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124512 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124451 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124390 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124329 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124268 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124206 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124145 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124084 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124023 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 123962 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 123901 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123840 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123779 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123718 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //