Array 1 2680367-2679161 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081922.1 Bacteroides fragilis strain BFG-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 2680366 35 100.0 34 ................................... GAAAAAAATGAAAAAAGGGACCGTACAATTCATT 2680297 35 100.0 34 ................................... ACAAAGAAAGAATTGCAGCGGTTGACTGAAAAGC 2680228 35 100.0 32 ................................... TCTACCGTTTATTTCTTGCTTGATGACGATTC 2680161 35 100.0 33 ................................... GTAAATGAGATTTATAAATTATTAATTAAAAAA 2680093 35 100.0 34 ................................... GAAGCCGCATTAGAGTTAGTAAACGCATTAGTAT 2680024 35 100.0 33 ................................... AAGAAAATCGTCCCCGATTTCAAGGATATTTGC 2679956 35 100.0 35 ................................... CCAAACGTCCGATGATGGAAAAGAATGGCGTAATC 2679886 35 100.0 33 ................................... TTTTTCCTGTCGCAAAACTCATCAGGGATGGCT 2679818 35 100.0 33 ................................... AATTTTAAAATCCATTTGTTTAACACTTTAATT 2679750 35 100.0 31 ................................... AATTCGTTTGTCTGGTTATCTTATTTTTCGT 2679684 35 100.0 35 ................................... ACTATATAGTCACCACAGAAGAAGAAGGTGATTTT 2679614 35 100.0 37 ................................... GAATTATTTGTGTCGGCGCTCAATCCGCTCAAAGAAG 2679542 35 100.0 34 ................................... AATATGCAATTCTTATGCCCAACGGGTATAAGGT 2679473 35 100.0 32 ................................... AAGAAAATGAATAAAAGTAATAGCAAAAAACT 2679406 35 100.0 33 ................................... GGAATTTTTATGATAGATGAGCTGCCCAAAATT 2679338 35 100.0 34 ................................... CAATGATAGCCAAGATGTTTAAGGTCCAACCTCG 2679269 35 100.0 39 ................................... ATGACAGTAAATATGTAAACGTAGACCGACGACGAAGGG 2679195 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 18 35 100.0 34 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : CTAATATCCAAAGCATCTACAATGTAATTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAACAATGGTAAAAGGGGCTATCCGACTTTTGGGGACACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : ATATTGATAATCAGATTATTATAAAATATGTATTCTATCTGTATAAATATATAATAACTTATTATTCAGTTAGATAGATGAAGTGTTGAACTGATTTTCGCAAATGTACTCTTTTTTTCTGTAATTTAAATAAATAATTTGTAGAATATAGAGATATTTAATTGATTATCACTTTGATATGATCGATTCATTATTCGCAAATGCCTGCTTCATTTGTTATATTATAGCCTATTTCGAAAATAAGATTAATCTTATATTTATAATTATCAGATAATAAGTGTATTATGTCAAAGAACGAATTGCTTATTTGTTTTTTTTCGCAAATGATTTACTAATATACAAAAAAGCTAGTTCTTTCGTAGCTTTTATACATTATATATTATTTTTCATTTAAAAGAATAAGCAGAAAATCAATGAATTAAACAAATTCTGATTTTCGCAAGAGGTTTAGACTATTTCGACGGTTTTAATTATCTTTTTTCGTATAGGTTGATATATAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 2819844-2818918 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081922.1 Bacteroides fragilis strain BFG-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2819843 29 100.0 36 ............................. AGTCGAAGATTTGCTTTAACAGACGCTGTTCTATTT 2819778 29 100.0 34 ............................. TAAATAGCACGTCGAAGGCATCGGTGCCGTCGGT 2819715 29 100.0 34 ............................. ATCATAATCGCTTTGCCGTTAGTCGCGGCGTTCT 2819652 29 100.0 37 ............................. AATAGACATTACCGGCACTTACGATGATTGGCTGGCA 2819586 29 100.0 34 ............................. CAAGTCTGTGGGAAGACCGTACATAACTACGTGC 2819523 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 2819460 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 2819395 29 96.6 34 .....................T....... TACTCTAACTGATTATCAGCTGTAAGTCCGGTTA 2819332 29 100.0 34 ............................. CTGAGTATTTCGACTTGTATTTCTTTGAATTCCA 2819269 29 100.0 34 ............................. TAGCTAATGGAAATTCTACAGACGTGTCTTCTTT 2819206 29 100.0 36 ............................. TTCGTCATACTCTGAAACAGAGCGACACCATTTCTT 2819141 29 100.0 35 ............................. AAAGGTTTGAGAAATTTGTCGAGTGAATCGCTGGT 2819077 29 100.0 35 ............................. AAAAGAGAGCACTTGATGCAAACGAAAAAGAGCTG 2819013 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 2818947 29 93.1 0 .........................G.C. | A [2818923] ========== ====== ====== ====== ============================= ===================================== ================== 15 29 99.3 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTGGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAGCTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGTTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : AAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGATTTTTTTCTTCTTTGCTAGCAACATCCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACATTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCGTGGATAGACGATACGATGGAAGGTATTGTTTTTGACTATG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 4554863-4556208 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081922.1 Bacteroides fragilis strain BFG-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 4554863 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 4554940 47 100.0 30 ............................................... CGTAACCGTTAGCTTGGCGTTATGCTTGGC 4555017 47 100.0 30 ............................................... TTTGTTGAGTCGCTGGAAACGATTTCCTTG 4555094 47 100.0 30 ............................................... CCTACCAATCGAACCTGCGGCGAAAAAGAA 4555171 47 100.0 30 ............................................... TAACTTTTCTTTGTTGGAACTGATTAATAC 4555248 47 100.0 29 ............................................... AGACCAGACAGGTTGCGTATCTGTATCAC 4555324 47 100.0 29 ............................................... CACCAAAGTGAGCCTTAACCTGTGAGGCA 4555400 47 100.0 29 ............................................... ACCAAAATGCTTACCATTACGCTGTAGAT 4555476 47 100.0 29 ............................................... TAGAAAACTGAGTCTCACACATAGCACGA 4555552 47 100.0 29 ............................................... TAAGTTAATAAAACATTCTCCGCAATAGT 4555628 47 100.0 29 ............................................... CTACCTTCTGAAATTTCCTCCACCATCTT 4555704 47 100.0 29 ............................................... TCCACAGCTGAAATATCAATAGAACCATC 4555780 47 100.0 30 ............................................... TGGCGAAAATGTTACTTACTCAGTCGATGA 4555857 47 100.0 29 ............................................... CGCCTTCGATATTGTGCAACGTTCGGAGA 4555933 47 100.0 29 ............................................... TATGTATCGGACCCTGTGCAACTTCAATC 4556009 47 100.0 30 ............................................... AGTATGGTGATAGCACACTAGCACCCTAAA 4556086 47 100.0 29 ............................................... TGTTTGATTACTATTACTCCCTCTCGTAT 4556162 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 18 47 99.8 29 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGTTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGGATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CTTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //