Array 1 68400-65089 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJFA01000003.1 Bifidobacterium moukalabense strain GB01 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 68399 33 100.0 34 ................................. ATGCGCAATTTTAGTCAAAATGCATGTTGATGCC 68332 33 100.0 34 ................................. ATTGTCACTGACTATTTGACTGGCGTTGTTAAGG 68265 33 100.0 34 ................................. GTTTATTATTGAGAATGAATGTCCATAAATGTTC 68198 33 100.0 34 ................................. CATCCGAAAACTGCCGGTACGACTGCAAGCACCA 68131 33 100.0 35 ................................. CATGATAGTTTCCTTTTTGTCAGCCGTCCGCCGAC 68063 33 100.0 35 ................................. CTCCTTGACTGGATTGTTGAGGTTCGCGTATTTGG 67995 33 100.0 34 ................................. ATCGACGAATACCACAAGTATCTGAACCAACAGC 67928 33 100.0 33 ................................. CGGATCCACGCCATGGTTGAGCAGGTTGGCCAC 67862 33 100.0 33 ................................. GAAGGCAAGGCCGAGGACGATGGACTCATCACA 67796 33 100.0 33 ................................. ACCGAGGGTATGAACGCTCCATGGGTCACGCAA 67730 33 100.0 33 ................................. CAGCATGACATTCAACAGCGAGTTTCCACAGAC 67664 33 100.0 34 ................................. TGCGAGCCATTGGCTGCTTGCGTCGATGAGGTCG 67597 33 100.0 35 ................................. GATATGATACATACCTTGCGGACGACTCAAACCGG 67529 33 100.0 38 ................................. GCGCGGATCGGTGAAGATATTGAATTCCGCCACGGGAC 67458 33 100.0 34 ................................. GAGCTGGTCCCGAACGGACAGTATGCAGCATCGG 67391 33 100.0 34 ................................. ACTCTATGTGTCACTCTATGGTGGTGTACACCGC 67324 33 100.0 35 ................................. ACGATCCCACCCGGTTCGACCGAACTGGTGATCAG 67256 33 100.0 34 ................................. CACAGGCGAAGTCTACATGCTCACCTCCGTCTCC 67189 33 100.0 34 ................................. GGGAATGGTGTCGGCCCGGACAACGTGATAGCCT 67122 33 100.0 33 ................................. ATGGACTGCCCAGCCTCGCTAGACCATATCATC 67056 33 100.0 33 ................................. GACACCGGCTCGGCCAGCTACACCGGCAACCTG 66990 33 100.0 34 ................................. ATTGATACTACGCTGTATGGCACCACGTCCTAGC 66923 33 100.0 34 ................................. AATATGATACATACCTTGCGGACGACTCAAACCG 66856 33 100.0 34 ................................. ACCCACAATATATGCGGCACGAATGGAATTAAGC 66789 33 100.0 33 ................................. ATGCATTCCTCGACGGATTCGCGCAGTTCCTTG 66723 33 100.0 34 ................................. TTTGAAAGGAATGGCGGTTTACGGAGATCCGAAG 66656 33 100.0 34 ................................. CTGAAATTTCACCATTGATTTTCATGAGCGAATT 66589 33 100.0 33 ................................. AAGCGCATGACAAATACTATTATCGACGGTGAC 66523 33 100.0 34 ................................. GTCCATGCACAGTCTTTTTACATTGTCAAAAGTC 66456 33 100.0 34 ................................. GCCGGATAAGCAGAATTCCGGCGACAAGATCGAC 66389 33 100.0 33 ................................. ACGAACCAGCGGGGCAATCCGATACGCGAAACC 66323 33 100.0 34 ................................. AAGGTAAAAAGTATCCCAAAAACGCAATAAAATC 66256 33 100.0 33 ................................. GTTGATACAACGCTGTATGGCGCCACGTCCTAG 66190 33 100.0 34 ................................. ATAAATTTGCGTATGTGATTATCGTATTTATTGG 66123 33 100.0 34 ................................. CAATTCAGGCGGAATAGCCAAGCCAAGCTGTCGC 66056 33 100.0 35 ................................. TTGACCGTGACCGTGTAGACATAGGATTGATTCGC 65988 33 100.0 33 ................................. ATGCGCGTGGTCTGATCTGGGACCATTCCCGGC 65922 33 100.0 33 ................................. CGACACCAACCGACGCCGGCTGGTACCTGCCTG 65856 33 100.0 36 ................................. ACATGGCACGAGACGTGCAGGTGTTCATCCGCAACG 65787 33 100.0 34 ................................. TCCTCCCGGCCGGCCCTGCCGGGGCCCGCGATGG 65720 33 100.0 34 ................................. ATCGAACCATCCGACTGGTCCGACCAGGGAGACA 65653 33 100.0 34 ................................. AAGGGCACGTGTACACGGCCCCGCAGATGATCGC 65586 33 100.0 33 ................................. TACAGCGACGGATCCAACCTCAAAGGCTACCTG 65520 33 100.0 34 ................................. CTCTTGAATGATCTGCTACCGCTCGGCCCTGACG 65453 33 100.0 33 ................................. GTAGGCGTGTTTGTGTGGTTTGCAGTAGCGTTG 65387 33 100.0 34 ................................. TAATGAGCAATCCCCCGAAACAGAAGGGCACGAA 65320 33 100.0 33 ................................. GTATCGGACTGCGGAACGCCGAAAACTTCCTGA 65254 33 100.0 33 ................................. GAATGCCAACGCGACGAACTCACCACGAGTGAC 65188 33 100.0 34 ................................. CAACACGTATGCGACCAAAACCGATGTCAGCAAG 65121 33 81.8 0 ..................T.T.GA...CT.... | ========== ====== ====== ====== ================================= ====================================== ================== 50 33 99.6 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : CTGCGGGAAAGAGACGATTGCGTAACGTTGCGAAGACTTGTATGAAGTACGGGCAGCGAGTGCAGAATAGTGTGTTCGAGTGCTCGGTCACTCCAGCAGATTATCTAACTCTAATAAATGAAGTGATGAAAATCATGGATCAAGAGAAGGATAGCCTACGCTTATATAAATTAGGAACGAAATATTCTGAGAAGATTGAATATTATGGTGTGCAACGGCATCTTCCTGTGGACGATGTAATGATGATCTAGGCACCGAAGTCCGCCGTTGTGCGAAGTGGAAGCTCTCATCGGATAAGGCGAGCTTCGCACTTGGATAGAACTTGGAATCGAAAAGTAAGTCGACTTTCCTTTGCTGTTTGATAATTTCAGAGAGAAGAATCGTTATTATTTTTTGGTCGAGTGATTAGAATAACAGGTTTTGACCTCAAACCCTGCTACTCTTGGACTCGTACGAAGGATAGATGTTCCACAATGTGAAACATGCTGTCCATCTGTGCA # Right flank : GACGGGGGCGGTCATGGGATTGCGTGAGCAGCGTGAACGATGCGGGTTGACGTTGTTCCAGTTGGATGCGTTGACCGGTATCGCCTATACGCGGCTGAGTACGTTGGAGTGTAATCCGTCTGAGGCGCGGAACATGTATTTGTGTACGGCTCGGCGGATTGCCGACGTGTTGCATTGCAACGTGTTGGACTTGTATCCGGATGAGGATGCTTGGCGTGGTGGCGTGTCGGCTGGCGTGACCGGGTTGAGGAGGATTCGTAGGGAACGGCATTTGACGCAACGGATGCTGTCGTCTTTGACGGGTATTCCTCAGCCTAATATTTCTTGGTTTGAGACTGGGTATCGTCCCGTGTCTCAGATGTATTTGGATACTGCGCGTCGCCTGTCGGAGGCGTTGCAGTGTGACCCTGTTGATTTTCTAATTGATTGAAAGGATTTTGTGATGAAGGCTGAGGTTGTTATTGTTTCGCGGTTGGCGCGTCATGGCGGGACGATGCTGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //