Array 1 22208-20657 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNDR01000056.1 Mycobacterium tuberculosis strain Bir 105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================== ================== 22207 28 100.0 46 ............................ TCGGGCACGGCCGAAACACCGCGCGAAGGGCGGTTCAAGTTTCCGT 22133 28 96.4 48 .........T.................. TGGGAGGATGTCACTCGGACATAGCTGTCATCGGCGGTGTGTTTTCGT 22057 28 100.0 42 ............................ TAGAAGGCGATCACTGGAAGCACGGCGCTTGCGAGTTTCCGT 21987 28 96.4 48 ........................G... ATGGAGCAGTAGCGTGGCTGTGGTGTGGCGGGCGATATGCGTTTTCGT 21911 28 100.0 43 ............................ ATGCGAATCCGCTGTCAGCACATGGGATTCCGAGTGTTTTCGT 21840 28 100.0 2 ............................ CC Deletion [21811] 21810 28 100.0 43 ............................ ACTTGCGCGCACAACGCATCCGCCATCCACGGGGCGTTTTCGT 21739 28 100.0 46 ............................ GCGAGAATAAGATTGTCAGGCTGGTGCTGCGTTTCCGTGTTTTCGT 21665 28 100.0 44 ............................ CTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCGGTTTTCGT 21593 28 100.0 51 ............................ TTCGGGAGCATGCCGCAGCTGCGGATGTGGTGCTGGATTTCGAGTTTTCGT 21514 28 100.0 2 ............................ CC Deletion [21485] 21484 28 100.0 44 ............................ TGGCGATTTACGACGCTGACGGGAACTCGTGCGAATGTTTTCGT 21412 28 100.0 0 ............................ - Deletion [21385] 21384 28 100.0 44 ............................ CCGCTGGGGGCAGGCCCAGGTGGGACGGTTCCTCGCGTTTTCGT 21312 28 100.0 43 ............................ ACGGGCCGTGGGGCACTTACGGCGACGGCGCACATGTTTTCGT 21241 28 100.0 0 ............................ - Deletion [21214] 21213 28 100.0 44 ............................ CCGCTGGGGGCAGGCCCAGGTGGGACGGTTCCTCGCGTTTTCGT 21141 28 96.4 0 ...........................T - Deletion [21114] 21113 28 100.0 45 ............................ CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGCGTTTTCGT 21040 28 96.4 0 ...........................T - Deletion [21013] 21012 28 100.0 47 ............................ TCGGCGTGTCCTCTCGCAGCGTCGCCGTCCCCGATATGGGTTTTCGT 20937 28 100.0 47 ............................ TCGATGAATGATGCGCGCCAGCGGTAACGCGTGGGATGTGTTTTCGT 20862 28 100.0 45 ............................ TGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTCCAGTTTTCGT 20789 28 100.0 49 ............................ ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATGGTTTTCGT 20712 28 96.4 0 ...........................T - Deletion [20685] 20684 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================================== ================== 26 28 99.3 33 CCCCTCTCGGGGTTTTGGGTCTGACGAC # Left flank : GCCCGTTCGCCTGCCTGCTCATCGGCCAACCCACCCTGCGGCGGCGGATGAAACTCGGCGTGCTCGCCGCGCTTGACCAGCGCATCGGACTCCGATATGCCATGCCGCCCATGACCGACACCAACACCGGCAGCTACCTACGCCACCACCTCAAGCTAGCCGGACGCGACGATGCCCTGTTCTCCGACGACGCCATCGGGTTGATCCACCAGACCAGCCGGGGCTACCCCCGCGCGGTCAACAACCTCGCCCTGCAAGCCCTCGTCGCCGCCTTCGCCGCCGACAAGGCCATCGTCGACGAATCCACCACCCGCACCGCCATCGCCGAAGTCACGGCAGACTGAACACCACACCGACACCCCGAACACCACCGACCCCGCCGGACATCTCCCGGCGGGGTCATTTCATGACCAAACGTCCTCACCGTCAACGCCGCCATCATGCTCATCCTGAATGCCGGTCAACAGACGCGGTGGCGACCCAGTCGTCGTAGTTTCCGT # Right flank : TCTATGGACAATTCGTCCAGCGTGTGGTAACAATGCCTGCTGATGATGTCAAAAGAACACAAACTCCTCTGCGCTGACAAGCCGTCCCCTTCCGTAGAACGTAACTGCCGCAACACCTCTTATCTTATAGATCCGGATGTTGTCGCAGTCGATGGCGAAGCGGTCGATACGTGCAACTAGTTTCGCGAGCTGGCCCTTCGTCAGCATCGCTTCGAATGCGGACTCTTGGACGCGATAGCCAAACCCGGCCAGGATCTTCGCAAGTGAAGCCCGCCGCCGGTTGTCGCTGATGTCGTATATTACGAGGACGAACATCTTGCCTATAGTGCCGCTGGACTCGTCCACTTTGAGCGGGAGATTGAAGTACTCCTCACGGCTGCGAGTGGGCATTTAGGCTCCGGATGGCTCGGAGGTGATATCGATATCGACGAGCCGCGACGGGTGCCCGGCTTCGATAACACGCACGAGGCTTTGCAGTTGCAAGTCGAGGGCGTACTGAA # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.79, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCTCTCGGGGTTTTGGGTCTGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //