Array 1 114-2723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJRR010000088.1 Acinetobacter baumannii strain 170714 NODE_199_length_162341_cov_127.323753, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 114 29 96.6 31 ............................T GCAGTTCTGCGTTACGTGTTTCAGGATGCAT 174 29 96.6 31 ............................T AAAGGGCGTGGCAAAGGCATTACGTGTGAAA 234 29 96.6 31 ............................T TCATGCGTGATGCAAAGCGACTTGCTGCAAT 294 29 96.6 31 ............................T GAGCAGGTCGGTTATTCTGAACCTGAAAATA 354 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 414 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 474 29 100.0 31 ............................. CAAGCGATAACTTGCCGCCAATCACTGTTTA 534 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 594 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 654 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 714 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 774 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 834 29 100.0 31 ............................. TTAGAACCAAAAGTTACTTCAAAAGAACGAA 894 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 954 29 96.6 31 ............................T CTACAGCAGCCGTCCAACGGTGTGTATCGAT 1014 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 1074 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 1134 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 1194 29 100.0 31 ............................. ACCGATGAAGCACGAAACACAATCATGCTTT 1254 29 100.0 31 ............................. TACGGCGGATGATGTGGTTCGCCTTCATAGC 1314 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 1374 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 1434 29 100.0 31 ............................. GAAGTACGAATCAATGTGAATGAATAACCAA 1494 29 96.6 31 ............................C AGTAACAGCAAAAACAAAAACAGTAACTAAA 1554 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 1614 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 1674 29 100.0 31 ............................. TCACCAGTGCCAGTGCCAGTGCCAGTGCCAG 1734 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 1794 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 1854 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 1914 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 1974 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 2034 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 2094 29 96.6 31 ............................T AACAGAAGCGCAAAAAAAAGCGTATATCATT 2154 29 96.6 31 ............................T TCACCTGCAAAGTAAATCGCATAAATCTCGC 2214 29 100.0 31 ............................. ATTTCAGCGTCAATAGTCTCAATATGATCGA 2274 29 100.0 31 ............................. TCCCGGAAGGCTTGGCTAAACTTGTACTTTT 2334 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 2394 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 2454 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 2514 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 2574 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 2635 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 2695 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 44 29 98.1 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : AATTAGGCAGACCTCATACCCAAGTTGTAACCTAAATTTTAGCAACTTAGGAAAACTTTACCTTCAAAGGCTTTATGCAACAAAGCCGTTTTAAGGTGTAACTGGTGCAATCAG # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAGATGGCGTCAATTGAACAAATTTTATAAATAACTGTTTTATATAATTTAATATTTATAAAAAAATCCCAGTGTACACCACAGTGTANNNNNNNNNNTCAATTGAACAAATTTTATAAATAACTGTTTTATATAATTTAATATTTATAAAAAAATCCCAGTGTACACCACAGTGTACAAATTATCTATTGCTAGGCTATTTTACTGAGTTTAGTTGTCATGCTGGGTGACGAACTCAGGAGTTAAAAACACTCCCCTCACGCGCCCGCGCATTTTCTTGATTATTGTCTGACGGTATAGCGGTTTGCTGTGTTTTTTCGCTCCCATCATTTAATTGAAGCGGAATAGAGTATTTAAAGCTGCCCCTCTATTTGGTGGCTCAGGGGTCCCGAAAATTTGGGAGATTGAACATGGTGACTTTGGGTAACTCAGTTATCTACTGACTATC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 28035-30706 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJRR010000018.1 Acinetobacter baumannii strain 170714 NODE_32_length_48077_cov_132.492828, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 28035 30 93.3 30 ............................CA TGGCGTTTCAGACTTTAACTCCACATCGAT 28095 30 100.0 30 .............................. CTGTAATTCGCTCACCAATTCCATACCGCT 28155 30 93.3 30 ............................GA TCTTCGTGAATCTGGGCAATTAGAGCAGGA 28215 30 96.7 30 .............................A AGATTAATAAACTATGAACCCAACACAATC 28275 30 100.0 30 .............................. TAGTTGCAGATAAGGCCATTCGACAACGCT 28335 30 93.3 31 ............................CG CCAAATCCAAGTTTGAACTTTCCGAATTTTC 28396 30 96.7 30 .............................A GTGTAAGTGGTGGCAGTAATTCTGGAAATT 28456 30 93.3 30 ........T...................T. TTTGTAAGAATAATCACGGAACTCATTAAT 28516 30 96.7 30 .............................C AAATCTTGATGACATGCTCAACAAAACACA 28576 30 96.7 30 .............................G AGGGTTATGTTTTGGTTTCTAAGGATAAGT 28636 30 100.0 30 .............................. CATACATTAACTTTAAATAATCATTCTGAC 28696 30 96.7 30 .............................C ATGAAAAACTAGCTTCCACGACATCAATCC 28756 30 90.0 30 ...........T................TC TTGCTGTGCATAAGCCTGTAAGTTATTTAA 28816 30 96.7 30 .............................G TTGCCCGGATCACGACGATCATTAGAATAA 28876 30 100.0 30 .............................. CTAATCGATGGTGAAGATTTTGAACAAGAT 28936 30 96.7 30 ............................G. TATCTCAATGGTGTGACTTGTTAGCACTAG 28996 30 96.7 30 ............................T. AATGCAATTCGGAGCATGGCGTACCGAAGA 29056 30 96.7 30 ............................T. GTGTGGACTCCTCAATCAGCATCTTGAAAT 29116 30 93.3 30 ............................GC TCACAAGTCAAATACTATTTTGCATTATTT 29176 30 100.0 30 .............................. CTTTTTGCTTATAGTAACAAGTAGCAGAGT 29236 30 93.3 30 ............................GA ACTGCAATGCTGTGAGTAACGAACCTTGAT 29296 30 96.7 30 .............................C TTACCAGACACAGCACCTTCTTGAAGCATC 29356 30 100.0 30 .............................. GACGGTTAGTTACTTTTGATGTACCGCCAC 29416 30 96.7 30 .............................C TAACTCACCGCGATAAATAGACGCGATACC 29476 30 96.7 30 .............................G AGACACAGAAAAAGAATGTGAACAATGGGC 29536 30 96.7 30 ............................G. CGATTAAATCAGTCAAAGGACCCTAAGCCA 29596 30 93.3 30 ............................TC AAACTCACAACCTAGAAAAGATTGCTAAGG 29656 30 100.0 30 .............................. GAAAAAGCCCCATTCGTTGTGAATAGGGCT 29716 30 96.7 31 .............................C CAAAAGCTTTACGGTAAGACACGTTATGCAG 29777 30 93.3 30 ............................TA CGAAAACAAAAGATACTCATGCACCAGAGA 29837 30 93.3 30 ...............T.............A CAGCATTTACACCAGCAACCTTTAAAGCAG 29897 30 93.3 30 ............................TG TTACATGCCCAATTGGTTGGCGCATGTCAT 29957 30 96.7 30 ............................T. CTAAGCGAAGGCTAACGCTCACATTCAAAA 30017 30 93.3 30 ............................TG TAAAACCGAATCCCAAGCTGAATAGGTTTT 30077 30 93.3 30 ............................GG ACATGTGAGCTTCACACCATCCTTCAGGCA 30137 30 96.7 30 ............................T. GTTGCGGCTCTCGCATGATGTGGTTTGATC 30197 30 96.7 30 .............................A CTGAAAAGATGTTGAGTGCAGGTTGTTCTT 30257 30 96.7 30 ............................T. GATGCTGAAAACTTCACAGCAGGCAATCCA 30317 30 93.3 30 ............................TG TAAAGGATGTGAGGAACGTCGTGAGTGGAT 30377 30 96.7 30 .............................A CTGACTAGTGATTTGAGGAATGTGCTCACC 30437 30 93.3 30 ............................CA AACACAGCATTATTGGGCCTTCAATACGAT 30497 30 93.3 30 ............................GA TGCAGGCGGAGTCTGCTATGCGACTGGTAC 30557 30 93.3 30 .................T...........A ATAACCACGGTTATGGTAAGTCACTTTTAC 30617 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 30677 30 66.7 0 ...T...A...T.....T..C...AGCGT. | ========== ====== ====== ====== ============================== =============================== ================== 45 30 94.8 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACTAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAATAGACAAAGCCGAACAGCCTGCTGAAGTTGAACAGATTAAACAGTTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 792-103 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJRR010000059.1 Acinetobacter baumannii strain 170714 NODE_81_length_10493_cov_138.303345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 791 29 100.0 31 ............................. CCATTGTCTTAAGGATTGGGTCAAACGCTAC 731 29 96.6 31 ............................C GTAGGGCTAGGAGGAGCAGCACCATCAGGAC 671 29 96.6 31 ............................A TATGCTCACATGGTGATGACATCTTCAGGTG 611 29 100.0 31 ............................. TTAAATCCGTGAGTTTCAACAAACCAGTTAT 551 29 100.0 31 ............................. AACAGAAGAACTAGCTGAGCACTACTACACA 491 29 96.6 31 ............................C CCTTCTATATTTTCGCCTGCGATATTTTCGC 431 29 100.0 31 ............................. CGAAATGCGTGGTCATCAGATCGCACAGCGC 371 29 100.0 31 ............................. ATATGTTTATACGGTTAATAAATCAGTACAA 311 29 96.6 31 ............................A AGTCTCGGTAAACGTAGAGATAGAGATACGC 251 29 100.0 31 ............................. GTTAGGAGCCAAAAACTCACTTAAGATAGCC 191 29 96.6 31 ............................A TAGTCGCTTGCGGTACGATCTTAGCTGCACC 131 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= =============================== ================== 12 29 98.3 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AAATCAGTTTTAAGGGGCTTTGTTGCACAAACCTATCTCTAAAGGCTTATTCCACAATATAATTTTGAGATGAATAAGCCTACACCTAAAATCTACCGTACAA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 6348-6854 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJRR010000059.1 Acinetobacter baumannii strain 170714 NODE_81_length_10493_cov_138.303345, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 6348 27 75.0 27 T...C.-....A......AG..G..... TTAATGCTTAGCATTGATTGATATGTG 6402 28 85.7 29 ...T.C.............G.......T ATAGGGCAATTCTGATCTTAAGTATTTAT G [6407] 6460 27 78.6 39 ....GC..C.AT...-............ GCCCTATTTTTCATTTTTCCTTCAAAAGTAATTTTGAAA G [6478] 6527 28 85.7 32 C..T......A.C............... CAGCGTTCTGCTTTACCGTTTACATATCGCGG 6587 28 92.9 32 ............CC.............. TTGCTTAGGCAAATGCACTGATTTTAAAGAAG 6647 28 100.0 32 ............................ TATCATGAACATTGTTCCTTGACCCACGGACA 6707 28 96.4 32 .........T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 6767 28 96.4 32 ...G........................ TGAGGGTGCCACACATTGGCAGGCTGGAGTGT 6827 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 9 28 90.1 32 GTTATTCATCGCATAGATGATTTAGAAA # Left flank : TGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTATTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGTTCTTACTCCTCACAAATAGTAGTGATCGGAGGTAGATCTAGGCCGTGTTGTAGAGTCGAGTATGACAAAAATTTAAAATGTTGTGCTATCATTTGGATAGTCCTTATTTAAGTAGTAATAGCTTTGAAAATGGACAAAAGCAGGTATGAAGTTTGGTCACGGAATACCTGCTTTTTTTTATGCCTTTTCATAAATTAAGATATATTTGTCCAAAATCCTTGTCAAACATTATTTTTATTTAAATAAAATTTTACTATCAATCTTATCTAAGTATTAAGGGTAGTGATTTTTTAAATGAATATTAAGTATTCCTAATTAAGATTTGTTATGATACAACTCTTACATAG # Right flank : AACATTCAAAGAGGCTCATCGAATCCAATCGAATTTTATCATCGCTCAGATGATTCAAAATTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCTGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGG # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //