Array 1 9682-6954 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILA01000020.1 Dolichospermum sp. UHCC 0406 scaffold20_cov325, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================================== ================== 9681 23 100.0 50 ....................... TATTCTTGATGGACTCCAGGGTATTAAGGATAAAGAGTTTCCACATATCT 9608 23 100.0 52 ....................... CTTCTTGTTCTTTTTTATCTTGTAGCCAAAGCTTATAAGTTTCCACATATCT 9533 23 100.0 50 ....................... TATCAATGCTTGGAACATCATTGACCCAAAGAATATGTTTCCACATATCT 9460 23 100.0 49 ....................... ATCAGCAGCCAATCCTAAAAGGGCATAGGTTTTTAGTTTCCACATATCT 9388 23 100.0 54 ....................... TACCAATTATTCAAATAAAAATATTTTTTATTTACCCCTTGTTTCCACATATCT 9311 23 100.0 51 ....................... AAAAATGGGACAACTCAAGAATAAACCACGTTCAACTGTTTCCACATATCT 9237 23 100.0 49 ....................... AGATAGCTAAAATTTTGTCTGAGCATGGTTTTAGTGTTTCCACATATCT 9165 23 100.0 48 ....................... TTATTTCGTCGTGTTCGATTTTTGAAAGCTCTATGTTTCCACATATCT 9094 23 100.0 50 ....................... AGAAATTGTTTTGTAGAACAATTAAATATATGTTAGGTTTCCACATATCT 9021 23 100.0 49 ....................... CCTCGTTTAATCTTCCTAGTCCGTGAAAGATTTTGGTTTCCACATATCT 8949 23 100.0 50 ....................... ATAGCGTGGTTCGGGACAGCAGCTTTTAATAGTTTTGTTTCCACATATCT 8876 23 100.0 53 ....................... GACTTGCGCTGTAAATTTTTTTGTGCTATGGTTCAGGAAGTTTCCACATATCT 8800 23 100.0 53 ....................... AAAAAGTTAAGCAACGGTGGGAGTTAGAAGGCGGTTCAGGTTTCCACATATCT 8724 23 100.0 50 ....................... ATTTATCCAAATTTTGTTTCTGTCTTTAATCCAACGGTTTCCACATATCT 8651 23 100.0 53 ....................... TTCCCCAGTAGTTGAATACCTAAATGAGATAGAGACAAAGTTTCCACATATCT 8575 23 100.0 53 ....................... GCAAAACCTATGTTTCCCGATTCTTTTATGTAAGCTGAGGTTTCCACATATCT 8499 23 100.0 48 ....................... GAGTAGTCTGTTCCAAAAACAGCAGAGAGTTCAAGTTTCCACATATCT 8428 23 100.0 49 ....................... AAGCCATGATGCGATTCCTTTGTGTTTTAGTTTATGTTTCCACATATCT 8356 23 100.0 53 ....................... GCTTCATAGAACCATCTTGACTCATGTCAGGAATGACGCGTTTCCACATATCT 8280 23 100.0 51 ....................... ATTCTACAATGAGACAAATAACCATTAAGTGCAGCTTGTTTCCACATATCT 8206 23 100.0 48 ....................... TAATAAGACAGCATCAATTAATCCTACTACTTTTGTTTCCACATATCT 8135 23 100.0 52 ....................... ATTAGAGTGGTAAATTTTTGGGGAGAGGCAGGGGATCTGTTTCCACATATCT 8060 23 100.0 54 ....................... TTTTTGTTGTGCTGCATCATCCTTATTCGATGATTTCCAAGTTTCCACATATCT 7983 23 100.0 50 ....................... AATTCAGCGGGTTTTGTCCATTGGCATAATTTTTCAGTTTCCACATATCT 7910 23 100.0 47 ....................... ATAGCACCACGATTGATTAAACGAACTCCGGTAGTTTCCACATATCT 7840 23 100.0 52 ....................... AAGGTAGTTGTTGAGGCTGGAGCAGTAGTTCCGTTAAAGTTTCCACATATCT 7765 23 100.0 51 ....................... AAAACTTAGCCAACACATCCGGCGTAACCACGATATCGTTTCCACATATCT 7691 23 100.0 50 ....................... ACATCAAGGGCTTCACGTTACGAAAATATCCCAGACGTTTCCACATATCT 7618 23 100.0 48 ....................... AATAATTTAATGACTACGGCTAGTCAAGCTAATTGTTTCCACATATCT 7547 23 100.0 51 ....................... AGGAAAAACCCGGAGAAGTGGTGCTAAACGCCCTTTTGTTTCCACATATCT 7473 23 100.0 47 ....................... ACAACAGTAGTGTGAGATCCCATAGCTTGCAACGTTTCCACATATCT 7403 23 100.0 51 ....................... CCAATAGCATTGATAGCAGGAGCACTTGGTCCACTACGTTTCCACATATCT 7329 23 100.0 49 ....................... GATACTTTGATAGCTTTTCTACCAGGTCTAGTCTTGTTTCCACATATCT 7257 23 100.0 52 ....................... AGTTAGCCATCTTAGCTCTGATTGCACTGGGTATTCTTGTTTCCACATATCT 7182 23 100.0 50 ....................... TACCCTGGATAATATCTATCCACGATCTCAGTTTGCGTTTCCACATAATT 7109 23 95.7 49 ........T.............. TTATCAGTTTTTCTACTGCGAGGATCACCAATTTGGTTTCCACATAATT 7037 23 95.7 38 ......G................ AGCGATCGCTATTTACATCTCCAAGTTTCTTATTACTT Deletion [6977] 6976 23 87.0 0 .......A..........A...G | ========== ====== ====== ====== ======================= ====================================================== ================== 38 23 99.4 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : CTGATTATTTATGATTTACCTGACAATAAAGCTGCCAATAAACGCCGGACTCGTTTACATAAAATGCTCAGTGGTTATGGTAAGTGGACTCAATACAGTGTGTTTGAGTGTTTTTTGACTGCTGTACAATTTGCTCAGTTGCAAGCCAAGATAGAAAAACTGATCAAGTCTGATGAGGATTCTATTAGAATGTATGTGCTGGATGCTGGGAGTGTGAAAAGAACTATTACTTATGGTTCGGAAATTCCTAGACAAGAACAGGCTATCATTATATAATTGATACATCAGCTTAAATTTTTGGCAGACCTAGAGCGGGGTCAAAAACCCTGGAGATTCGCCAAACAGCCAGAACCTTGACAACTAAATACTTTCAGCGTTTCATTAGTTTCAGTTTGTGCTTGACCCAAAGCCTGAAATAAGGTTTTTTGAGAGGTCCGCCAAAATCGTCTCTGGATTCCGCCCCCAGTTTATGTTTCAGACGGCGGGGTTTCCACATATCT # Right flank : GTTGTAAAATATTGAGTATCAAATCATGTAGCATTAAAAAAAATGTCAGAACTAGCTACATCTAGCAACCGTAAAAACCCATCAAAAAACACCCCTTTAATATGGGCAGATGATACCGAATTAGTTAGCTTAGTTTTTGACCTAGAAGTAACTGATTCCACCGCTCTATATTCGCAATATACCATTGGACTTCATGCTTGGTTTCTGGATCAAGTGCGGCAAATTAACCCAACGCTTTCAGCATATTTACATGATGGTGAGTCAGAAAAACCCTTCAGCATTTCTGCACTAGAAGGTCAATTACTTCCCACCGGAAAACAACTACAACTGCAATCAAATCAAATATATCGTTGGCAGATAAACGCTATTTCTCAACCAGTAGTTCAGTTCTTGAGTCAGTGGTTAATACAACCGCCAACTACTTTGAAATTAAGGGATGCTTGCTTACAAGTAAAACAGATAAGTATTGTTAATCCACCAACTACTTACAACAAACTACT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 44686-44865 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILA01000028.1 Dolichospermum sp. UHCC 0406 scaffold28_cov359, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 44686 37 100.0 37 ..................................... ATACCAAGTTTTTAAAGCTGCTAATGCCGGATCATCT 44760 37 100.0 32 ..................................... AATTTATTTCTCAATGAAAGCTATGGGAGAAA 44829 37 86.5 0 ..........T......................GGGG | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 95.5 35 ATTGCAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTATTTCTTACGATATTTCTGAGGATAAACGCCGGACTAAAATCCATAGGATTCTCAAATCCTATGGTCAATGGGTGCAGTATAGTATTTTTGAATGTGAGTTAACTGATACTCAATATGCTAAATTGCGATCGCGTCTCAATAAACTCATCAAACCTGAAACCGATAGCATTCGCTTTTACTTCCTTTGTGCTTGCTGTTTTGGTAAAATAGAAAGAATTGGTGGTCAAGAACCCCCTGATCAGACGATTTTCTTCGCTTAATGCGCGGGTGGGTGGGTGTAAAAAACTCAGGTGAGAAAAAAATGACTGCAATCATCTCTACACAAGCTTTTTATGGAGTTCGTGGAGTTCACCCATCCGCGCACTTTGCACAGCAAGGGTTTCAGCTATTTTACTCCTTGACACTTTTTCTGAAATGGATTATTATAAGACTATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGACTTCAGAACTCCGCG # Right flank : GTAAATGAGCAATCGTACAGAAAGTTACGCTAAGGCTGTAACCCTTACTGGATAAACATTCTGCTAATCAATATTTTTGACGATTCTCAAATTCTCAACGTACCAAATAAACTTAAGTTTTAAATGGTACAGTTTTATCCCTTTCAATCAGGATGTTACCAGTAGGCTATTAAGTCCTTATCGTAACTTTCTGCATGGCTGCTCATTTGACCCCCAAATCCAGAGCCGGTTTAAATAATGGTAATCATGTTTTACTCAAGAAACAAGAGGGGGATTTGGGCTTACGTCGATGTGATTAGGGGACCAAATAAGAAAGTTGAGGGCTTGAAAGGCTGGGTTAATTCTAATTATCTTTCTTGCACTAAAGAACCCATTGATTAAATTTTGAACATTTTCAAGGAAAATCTATGAAACCTGTTTTGAAGACCCAAAAATTAGCATTACCACAAGTACAGCAATACCTACAGTGGGCGAAGCGATCGCTATTTATCTTAGGATTC # Questionable array : NO Score: 8.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 95916-96300 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILA01000004.1 Dolichospermum sp. UHCC 0406 scaffold4_cov319, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ============================================================================================================================================================================ ================== 95916 38 79.5 172 .........CT.TA......C..C.-......G...... TGCAGCAAGAATTAAATATTACATCTATAAATATTACTCAATTCGTCAAAACCTGAATACTCATATCCTCAACAACTTTAAGACGTTGAGCATTTCGTGATGAAGTGTAACTAATTTAGCCAGAAAATTGAAAATAGCCAAAAATAAATTTATATCTTTATGCCATTTACAG T,C [95946,95953] 96128 39 97.4 28 ...........................C........... ACAACATTGAAGTATTTCTTATTTCCAA 96195 39 100.0 28 ....................................... GCAACATTCGAGTACATTTTATCTAGAT 96262 39 97.4 0 ...........C........................... | ========== ====== ====== ====== ======================================= ============================================================================================================================================================================ ================== 4 39 93.6 76 TTTTGTAAATCTCCCTTGTGACAGTATTTAAATAGTCAT # Left flank : CCATACTTCTTGACTCGCAATCTTTGGTCTAACTACAAACCAAGTATTTTCACCATCTAAAATTATTTCATGGGTGTATTGAATGAATGTCCCTAAAGAGGAAGAGTGATAAAAATAAGCGGGTTTTGGGAATTGGTGACAATAATCTGCAAAAGCTTGTAAAATCTCATTTCTTAAAAAGTAACGTTTATGATCCTTGCCTAATTCTAAGATAAAGTCACCTAAAACATTTTTTTCATCACTGTTAACAATAGTTTGCACTAATTTATACATTGTACATTACCAAACTCTAGCTAAAGTTAGGATTATTGAGATACTATTTCAGGTTAATAGTAAATAAGTTACTCAATTATTTACTTCTAGCTAAAGGATGAACCCTTACCTCCTCTTATAGATAGAGAAGTATCTATTAGTTAGATGACAGGGAATAGATAAAATTTTAGCAATCACTAATTTCAACTCAATAACTACCAATTTGGCTTTGTTGCTATTAATTACCA # Right flank : TTTAATACGCAATTTAGAACTGACATTTTCTGTACTATTTAGAGTAACAAATTGCCAATTTGGCGTACCAGACAGGGAAAACATAGTATTCTGCATATAATAGTGTCACAAGGAGTATTTACAAAACTGAAGCCAGGAAAGATTTCAATGTTGTATGACTATTTAAATAGTGTCATAATCCAAATATCTGTATTTCCTATTTTTTACCAAACAATCAAGTTGGACAGGAAATGCTAGGAATTTGCCTATATTTTTTACTAACACAAGGGTAATGTGGTTAGTAATTTTCCAGTCTTTACAATCAAAAATTTCAGAACTTAATCTATTTAGATCATCAATTGCCAATGATACACCCCTAATTAAATGGATAACACTGCTCACTAAACCTCACAGAAAATTCATAAAGTTCTCTGATAACCACAAATAATGTTGATATTTAATCGGTAAGTTATCGCTATACTCGGACTTAGATATCGAAGTTATTTACCAAGAGAATTAAA # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTGTAAATCTCCCTTGTGACAGTATTTAAATAGTCAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //