Array 1 1594-125 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNQR010000100.1 Vibrio cholerae strain 86V1216 Vibrio_cholerae_NonO1_86V1216_Contig-100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1593 28 100.0 32 ............................ CAAATCACTAAAAGCAGTCGCTAAACCTTTCA 1533 28 100.0 32 ............................ TTTAGTGTTGAGCACTAGTAAACCCGTTTTCC 1473 28 100.0 32 ............................ TCAACTGATAGAATCTCAACAACCACGCCACG 1413 28 100.0 32 ............................ TTATCCGCTTTTTCAATCTTAATATTGCAAGA 1353 28 100.0 32 ............................ ATATTAGGCGGTTTTTCTTTTTGGTGGTGTGG 1293 28 100.0 32 ............................ TTAACGATCAAATTCACTCGCAGCTCGCGGGA 1233 28 100.0 32 ............................ TCATCATCACTAGAAAGCAATTGTTCTCTATA 1173 28 100.0 32 ............................ TAAGAAAAGTCTATGAAGAAACCGGAAGCATT 1113 28 100.0 32 ............................ GATATAACGGCGTTGCTGATTTTAACCGTATA 1053 28 100.0 32 ............................ GTGTGAGAGTTATCACTAAGCATCTCAAAACG 993 28 100.0 32 ............................ TGAATGAAGTAAAGGCGTGTATGTCATCTGGA 933 28 100.0 32 ............................ TTGCTTGATGGTGAAGTAACCGCGATCGATAA 873 28 100.0 32 ............................ TTAACCAAATAGCTAGGCAGTTAAACAGCGCT 813 28 100.0 32 ............................ TGGCTTCTTGTTGGTGCGTGTACGTGGAGTAA 753 28 100.0 32 ............................ TTTTCTCAGTGCCTCAACAATGCCCACGCCAC 693 28 100.0 32 ............................ ATTTAGCCTAGCCGCCGCCTCTGCGGGTGCTT 633 28 100.0 32 ............................ ACAACAGCAAGGCTTATCCACCCGAGAAGCAT 573 28 100.0 32 ............................ TCAAGCAAATCTCGATAAGCTTGATCGCTGAG 513 28 100.0 33 ............................ ATAATACACCACACAAGAGAAACGCCCCTTAAT 452 28 96.4 32 ...........T................ GAAACTTTCGTTATTAGTGATGGTGAAGGCAC 392 28 96.4 32 ...........T................ ATGACGCAGCTATCGATATTAGTCAAGGTAAC 332 28 96.4 32 ...........T................ ATCACTTTCGGGTTCCGTTTGTTCACCTTCGG 272 28 96.4 32 ...........T................ AAACGATGAGATCTGTAAAAATGGGGTTTTGA 212 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 152 28 89.3 0 ..........AT.............T.. | ========== ====== ====== ====== ============================ ================================= ================== 25 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTGCTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : AGGGCGGGATCGAACTTTAACCACTGAAAATAAAAGACTTTATTTTATTGGGAACTTTTCAAGGTAATCACGATCTGATCATGAAGTTAAAAATATGAGAAACTCGTACATGATTATCATTGAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //