Array 1 459484-458916 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATN01000048.1 Pasteurella canis strain NCTC11650, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 459483 28 100.0 32 ............................ CTTTGTCCTCAAGCTCAATTTCGTAACCTTTC 459423 28 100.0 32 ............................ CATATGTTTGTTTCATGATTTTTTCCTTTTTT 459363 28 100.0 32 ............................ CAAATTAGCGAGAAAACCGCAGTTAATTTACC 459303 28 100.0 32 ............................ AAAATGTCTGAAACGTTCGGCTTCAATTTGCA 459243 28 100.0 32 ............................ ATACCATAATCTTTACTTAAGATGAATTTTTT 459183 28 100.0 32 ............................ ATACCATAATCTTTACTTAAGATGAATTTTTT 459123 28 100.0 32 ............................ ATAGTGTAAATAAGCGCCGAGTGGTGACATTG 459063 28 100.0 32 ............................ TACTCTATCATTAAAAGCTTTATAATATTTCC 459003 28 100.0 32 ............................ TTATAAGCTAATTTATAATCTTCAGAAATAGA 458943 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCAACATCGTATAGATGGCTTAGAAA # Left flank : TAACGGAAGAGCAGATTAAGGATTATTTCGAGCAAACTAAGAACATGAGGTATGACTGGTGGGGAGCTATTGGCATAGTGCTTGGCGTTAAACAAAAACGCAGTAAGTTCTTTTGCTCAGAATGGTGTTTTAATTGTATCAAAGGCAGCGATCAAGGTTGGAGATTTAGTCCAAATGATCTAAACGAGATTTTTAGAAATCACAACTAAATAAAAGGGCGTTGAGCCCTTTTTTACATAAAAATTAAATAGAACGTCAAATGAATAATTGTGATCTCCAACACAGACAATGATTTTAATAATGTTTAGAATTTAACTGTTATGGGCTAAGCAATAAGACCACTGTGCTCTACTCCTAACCTAATTTATAACCCTTTTTTTTCTAACTAGCTAAATTAACTAATGAGATCAAAGGGTTATAAATATGCTGTAAAAAAGGGTTTTTCTTTCAGATGTTCTTTAACAATTTGAAGAATAAATAAATTTTTATTAATATTATGA # Right flank : GCTTTATAGTATTATTGGACAACAGTTATTGCAAAATGGAACGACATTCACCAGCAACGTAAGATTCTAGAAGAAAATGAAAACGAATCAAAAAAGCGCGGTAGCGAAGCTGAGCGAGTATTGTCAAAACGAAAAATTGAAAAACATATTTATGATGTGGGAATAAGTCGTTTAGATAGAATGGAACCTTTGTTGAAATTTTAAAGATATGGGGAAAATACCCCATACCTTTATTATTTAAACGAAGTTTTCAAAATACCCATAAGTGGATAATTCTACGCCTTTCTCTTTTAAATAGTCTTCGATTTCTTCTTCTGTTTTAAAGTTCTTAAAATTTAATGGTAGAACATCACCGTTTGGAGAATTTAGTGTTCTAGATTGATTGTCTTGCATAAGTGATTTACATACTTTGATACAAATAGGTTCAATTTCTTTAGGATCAATATTTGCAGTTGAAAATCCAGTAATATAAGGAGCTTTGATCTCGGAATTTTTTGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACATCGTATAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GTTCAACATCGTATAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 134090-135437 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATN01000052.1 Pasteurella canis strain NCTC11650, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 134090 28 100.0 32 ............................ TTATAAAAATAAAATCCAGTTAGTTCAAAATG 134150 28 100.0 32 ............................ TTTTATGCAATTAAGCACACCTCAAAGAAGAA 134210 28 100.0 32 ............................ TTAATAAATTAAGTTATTATTTATTTGTTGAT 134270 28 100.0 32 ............................ CGCAAGAAATGAGGACGGGCGTTTTTTTAGGT 134330 28 100.0 32 ............................ ACCACCTCGCGCAACTCTTTTTTGACTTTCCC 134390 28 100.0 32 ............................ TTGTCACAGATGTAACTGTTAAGTCTGGTGAT 134450 28 100.0 32 ............................ AGCATTACTCATAAAGACGGTCGCGATATTCA 134510 28 100.0 32 ............................ AAAATAGCGGATCTTGGTACTAATTTTGTGAA 134570 28 100.0 33 ............................ CATGTAACTAAGCGGGGCAGTGAATTTGTTTTT 134631 28 100.0 32 ............................ ATAAGAAAAAAACAATTTCCCAAGACATAAAC 134691 28 100.0 32 ............................ ATTATCCGTTGTGGAATATTTATCACAAACAA 134751 28 100.0 32 ............................ CATCAACACCAACAATTGGCACGATCCCATTT 134811 28 100.0 32 ............................ TCGTCAATACAACGAGTTTATGAATAAATATA 134871 28 100.0 32 ............................ ATTTTATGCTCCCGTTTCGATAACGAAAAAAT 134931 28 100.0 32 ............................ TTTATAAAAAATAAAAAACGCTATCGCATGTC 134991 28 100.0 32 ............................ ACATTGCATAATAAGTTTTTGTTTTTGGTTTG 135051 28 100.0 32 ............................ AAACGTGTTACAGGTGGCTCCGTTGCAGTAGA 135111 28 100.0 32 ............................ TTTTTGTTTTGTCTTAAATAATAATCAACAGC 135171 28 100.0 32 ............................ TTTAAAATTACGCACAACAGTTGGGTTGGCGA 135231 28 100.0 32 ............................ GTTGGTTTGGTCGCCAACGGGCTCATTATTTA 135291 28 100.0 32 ............................ ATGCTATACGCTGCTTGATGTGTGCATAAGTA 135351 28 100.0 32 ............................ TGATCAATATACACTTGCAACAAATCAGGATT 135411 27 82.1 0 ...........T.....T..-...A.G. | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.2 32 GCTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TACCTTACAGTGCAGACACTTATTTACATCGTATTGGGCGCACTGCTCGAGCGGGAAAAAAAGGTGTTGCTGTTTCGTTTATTGAAGCTCATGATTACAAATTGTTGGGCAAAGTTAAACGCTACACTGATGAACTATTAAAAGCGCGTACTATTGAAGGTCTAGAGCCCCGTACTAAAGCGCCTAAAGATGGTGAAGTGAAAACAGTCAGCAAAAAGCAAAAAGCGCGAATCAAAGCAAAACGAGAAGAAAAGCAAAAACAAATACAGCAGAAAAAAGTAAAAATACGGCATAAAGATAGCAAAAATATTGGTAAGCGCCGTAAACCCAGCGGACAAGTCAGCCAAACTGATTAATTTATTATGCAGGTAACCCTTTTTTCTTAATGAGTTTTTTATCTAATAAGATCAAAGGGTTATTTTTATAGCTAAAAAAAGGGTTTTTGTATATAAAATGTGCAAAAGCTTGATAAATATTGAGGTCTGAATTAAACTGCCAAA # Right flank : ACGGAAAATAAAGCATCGGGTACTAATTGTTGTGCAAGCCAATTTAGTCTGTTTTGCCTATTTTATCGTTGTACATTTTGTTTTTAACTTGATAAGAAGGGCAAAAAGACAGCCGCACTTTTGTCGGTATGTAAAAGTGCGGTTGATTTTTCTTCTGTTTTATAGCGCCTTATTGGGTTGCTGGGGTACCGTATTTTTGTGCTAACTCGTTATTTAGTTGTGTAAACTCATCAGTGATTTTAAGTAGTACATCTCTTTTCACCAGTAACGCTTGTCCACCAGCTTCGGAAGGATTTTGCTGTAGTTTTACATTATCTGTCATTAGTTCTGATGAAGTAACAAGTAAGATTTTTGCTTTTTCTTTTAGAGCACGAACTTCTGCACTATAAATAGCTAATGCATCTAATTCTTTTACAATACTATTAATTTCTTTTGAAAATGTAACTAATAGAGTTTCTAAGGCTTTTTTGTCACCTGATTGCAAAATTTCAACTAGTTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 181469-184259 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATN01000052.1 Pasteurella canis strain NCTC11650, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 181469 28 100.0 32 ............................ GTAGTTGATAAAATATTGTTTAATTTTCTTTC 181529 28 100.0 32 ............................ ATCTCATTTTTCATCTCTTGCAATGAAAATAT 181589 28 100.0 32 ............................ ACCTTCTTTCTTACCTTGACTACCCTCATTTT 181649 28 100.0 32 ............................ TAAGCAGAAAGTAAAATTCTAATTGCAATAAA 181709 28 100.0 32 ............................ TTTTTGATTTAAAAGCATCTCACCATGAGTAG 181769 28 100.0 32 ............................ ATTCTTGACCGTTGGTACTATCTCAAAAATGA 181829 28 100.0 32 ............................ TCTAAACAGGGTCGCAGGGGGTACAACTTGGG 181889 28 100.0 33 ............................ TTCTGTCAATTTATTTTGAGCCAACCCCCCCAG 181950 28 100.0 32 ............................ AACATAAGAAAACTTTCTTTCTCTAATCATTT 182010 28 100.0 32 ............................ AATAATGCTTAACATCTTGAACGCCTTGTGTA 182070 28 100.0 32 ............................ AACAGACGACACCTGTAGGCAATAACTAACTC 182130 28 100.0 32 ............................ TTTAAAATAATACTTTGGCTCAAGCCTAAGAT 182190 28 100.0 32 ............................ TCGCGTTCTCTCTTTTATTTATGCTTAAGTTA 182250 28 100.0 32 ............................ TAAAAATTGACCCGCAATTTGCGGGCCATTTT 182310 28 100.0 32 ............................ GCACTCAACAAGACGGAACCAAAGCCCGAATC 182370 28 100.0 32 ............................ TGTTACTGTTGGTTACAGATACTATTGGGACA 182430 28 100.0 32 ............................ AATATAAAAATAATAAAGATGTTCCTTGTACT 182490 28 100.0 32 ............................ CTTTTGAGTAATAATTAATAATTTTAAAAATT 182550 28 100.0 32 ............................ ATTTAATACAAAATATAATATAGAAAGTAATT 182610 28 100.0 32 ............................ AAAAGGATTATTAACTGGAAAATCTAAAAATG 182670 28 100.0 32 ............................ TGATGATCATTCTATTGATGATGTACCAGATT 182730 28 100.0 32 ............................ GTTTTTCTCACTTCATTTTGCTGCGCGCTACT 182790 28 100.0 32 ............................ AATACGGCATTTTCAGAGCGTGACGTGGACGG 182850 28 100.0 33 ............................ ACTTGTTATCTTCTGCGAAGTGATGCGCTTCAT 182911 28 100.0 32 ............................ AGGCAACGTCAAAGTGGATAGCACATTAACGG 182971 28 100.0 32 ............................ ATCGCCCATTCGCGAGGAAATACCAGAACCAT 183031 28 100.0 32 ............................ AAACATAGTTATTATCCTTAAAATTATTGTAA 183091 28 96.4 32 A........................... ACTGGCTTTCGCTAAAGAACCTCATTTAATAA 183151 28 100.0 32 ............................ GTTTTTAATTAATTCACCTGATATGCGCCAAT 183211 28 100.0 32 ............................ TGTTAAGTTATCCCAATCATCTCCTTGATTAA 183271 28 100.0 32 ............................ TGATACATTTTCCGGTTATGATTTTTTAAATC 183331 28 100.0 33 ............................ ACTTGTTATCTTCTGCGAAGTGATGCGCTTCAT 183392 28 100.0 32 ............................ AACAGTTGAATCTTGCGTTAACTGTTTTAATA 183452 28 100.0 32 ............................ GTTATATTGAGAAACGGTCGTAAAGCGTTTGT 183512 28 100.0 32 ............................ TTTCCTTAAAAAAGGATAGTTGAATATTTTTA 183572 28 100.0 32 ............................ TTTGCGAAGAGAAATTTTTGTTTTCTTAAATT 183632 28 100.0 32 ............................ TCAGGGCGTCGTGAGTAAAGCCAAAAGCGAGC 183692 28 100.0 32 ............................ ATTCCTCGTCATCACTTTGTACATCAACCCAG 183752 28 100.0 32 ............................ GCAAGCACCACACCGCATTTAGTCAAGTCATG 183812 28 100.0 32 ............................ GGAAAAAGTTATTGAAGACGCATTCAATACGA 183872 28 100.0 32 ............................ ATAATAAAATCCGTATTCCGTATAATGTATAC 183932 28 100.0 32 ............................ ATTTTGAGCACAGTAATCAAAAACTTTTTTGT 183992 28 100.0 32 ............................ AATAACCGACAGAAGACCAAATCTCTTTAGAA 184052 28 100.0 32 ............................ CTTTTCAAAGCTCTTTTAACTCGGATTAAAGG 184112 28 100.0 32 ............................ GACATTTAACTCGCGAAGATAATAATCATCGC 184172 28 100.0 32 ............................ ACTCAAATTCATCACCGTTTTTTACAGCTAAT 184232 28 82.1 0 ....................T.C.T.TC | ========== ====== ====== ====== ============================ ================================= ================== 47 28 99.5 32 GTTCAACATCGTATAGATGGCTTAGAAA # Left flank : CAGCTTTATCAACAATTATCACAGGTAGGATTGCAGGATTATGCGTTGATCAGTAGTGTAAATAAAACTCCTCCTGTAGCAGAATATCGTTGTTATAGCCGTGTACATCGCAAAGGACAAAGTACGATTCGCCGCACAGAAAAGTTTCTGAAAAGTATTGATAAATGGCATGAAGGGATTTGTGAAGAAATGCAACAACGCCAGCAAAATACACCTTATTTTCCACATGTACATTTAAAAAGTGCGAGCACAAATCAGCGTTTTATCTTGGCAATAAGAGTCAATAAAACCTCTCAGCCTCATATTGCTCAATTCAGTAGTTATGGATTAAGTAATAAAGCAACGGTGCCACACTTTTAACCTAATTTATAACCCTTTTTTCTAACTGGCTAAATTAACCAATGAGATCAAAGGGTTATAAATATACTGTAAAAAAGGGTTTTTCTTTCAGATGTTCTTTAACAATTTGAAGAATCAATAAATTTTTATTAATATTATTA # Right flank : CTGCTTAAATAAAGCTTATTATTTAAACATATTGAAAAAGTTAAATGTTATTTAATTTAGTTTAAACTGGATTTTAATATTTTTACACTTAGTTAAGGAGGATGTCGTGCGTAAGACACCTTATATTGCCTCTTCAGACTTAAAAACCATAATGCATTCTAAAAGAGCCAATATTTATTATTTAGAACACTGTCGAGTATTGTTAAATGGTGGACGAGTGGAATATGTGACTGATGAAGGTAAAGAGTCTTTATACTGGAATATCCCTATTGCTAATACTAGTTGCCTGCTATTGGGGAGTGGAACGTCTATTACACAAGCTGCAATGCGTGAACTATCAAAAGCAGGGGTAATGGTGGGGTTTTGTAGTGGCGGTGGTACGCCTTTATTCAATGGAACGGAAGCAGAAATTGGTTGTGAGTTTTTTAGTCCACAAAGTGAATATCGTCCTGTTATCTATTTACAACAATGGTGTCGTTTTTGGTTTGATGATGAAAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACATCGTATAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched GTTCAACATCGTATAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //