Array 1 3035471-3035143 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023567.1 Erwinia pyrifoliae strain EpK1/15 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3035470 28 100.0 32 ............................ TCGGCGCTGCCGCTGCTCAAACTCGCCGTGCT 3035410 28 100.0 32 ............................ ACCATCACTGACAGCGAAGCCCGGAATAAACC 3035350 28 96.4 32 C........................... AGTCCCGGCACCACCTCAGCGCCCAGCCCTGT 3035290 28 100.0 32 ............................ AGCTAGAGGGGGTAAATAGCGTGGACTACAGC 3035230 28 100.0 32 ............................ AAGTCGCGAACAGATTTCGGGGGGTTTTTGCA 3035170 28 89.3 0 ...........C............TT.. | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGATTTAAGCGCACTACAGCAAAGCGGCTGGAATAAGTGTCTTAGGGATTATATCGCCTGTAGCGATATCGCCCCGGTTCCGAAGGGGGCGGCGTGGCGCACCGTCCGGCGCGTCCAGGTGAAAAGTAGCGCTGAACGCCTGCGCCGCCGTTCGGTAAATAAAGGCTGGCTAAGCGAACAGGAAGCCGCAGAGCGAATCAGCGTACTCAACGAGCAGCGCAGTAATTTGCCGTTTTTGCAGATAAAGAGTGGTTCTAATGGTCAGGCCTGGCGGCTGTTTATTGAACATGGCTCGCTGGTATCTGCCCCCAGCGATGGCAGCTTTAGTTCCTATGGGTTAAGCGCCGCTGCTACCATCCCCTGGTTTTGACCCTTTTTTTTCGGCTAACGCTAACCTGTTGATTTCAGGTGGCGTTAGCATAGCGGTTTAAAAAAGGGTTTTACTGCGCATTTTAGGTTTTTAACTTGTTTTATAGCGAGTTAGTCTGCTTTACTAACG # Right flank : GGATTCAATAACCCATTCCCTTGCCTGAGTGTATGCTATGCACCACGGGCTTCTCGTTAAATGCACATTATGCTGACAGGCAGAAAATATGTTATCCGTGGCGCATCTCTGGCAGCGCCAGCTGTTCCATCGGTGCGCCTGACCTTACCTGTGCAGTGCAGTCTCACCGCCGTTGTATGCGGAAATTATTAAGACGGTTGTTTCACGGCAGTTAAATCAGCTGAATGTAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGCATTTTTATCGCGGGTTTTTTCACGGTTTTTTTACAACTCATTAAGAATAATCTTATATATATTTTGTGCTCATCATTTCGGTGTTGAGGTTGTTTTTAGATTTTTTCGATCAATAATTTCCGGAATTTTCACTTGGAGTTGGCCATTTTTTTTTCTTCTTTTTCTTCGATAGTAGCTTCGCCGGTAGTGCAATTGCCGTTTTTTGATTTGAATGAAATGCAAAGTTAAACTAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3045853-3045003 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023567.1 Erwinia pyrifoliae strain EpK1/15 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================================================================================================================================================== ================== 3045852 28 100.0 32 ............................ ATCACCGCTTCCCCCCTACCTTTGCAGTCTCG 3045792 28 100.0 32 ............................ TGCCGGACAGCGTGATGATTTTCAATAAACCA 3045732 28 100.0 32 ............................ GTTCCAGGCTTGCCGCACATCACCAGCCCACC 3045672 28 100.0 32 ............................ CCCGTTGTGGCTCAAAGCCGGAGATCAGCACC 3045612 28 100.0 32 ............................ TCTACGGCGAGTAGAAAATAACTATCAAGCAG 3045552 28 100.0 32 ............................ GGAAACGAACAGCGTTTTCCACTGCATTAATG 3045492 28 100.0 32 ............................ CATTCGTCTTGCCATCTCTTCGACCGGCAGCA 3045432 28 96.4 32 ...........T................ CGGGATAGCGCCGGGAAAATCAGTTGCAACGC 3045372 28 92.9 32 ...........T.........C...... CTGAAACCGTCAGGTTCCGGGTACTTTTTCTT 3045312 28 92.9 195 ..............T.C........... TAGACCGGTGCTTTTTTCTGTGAGCCGGTAGAGGTTCCCTGCCGTACCGCCAGACAGCGTATAGCGTTAAACACGCTCCACACCGGCTCTTTTAAAATAAATTCCCTCATCCATAGCTATATCAATTATTGCAGATCAGAAAAAAATATCCACTGGCGCTATCATCAGATCAGGCGTACGATGAACGGGTTGAAA 3045089 28 82.1 32 T..T.....T.A...A............ ATAGCGATATATATTATTGATAGTTAATGATT 3045029 27 82.1 0 T..........TG.......-...T... | ========== ====== ====== ====== ============================ =================================================================================================================================================================================================== ================== 12 28 95.5 47 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGTTTAATAGGGATAAACCTTCATTTGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCGGGCGAAGGCGATGAGATGCTGCACCCGTTCCATATTCACGGCACCCAGTTCCGCATCCTGTCGGAGAACGGCAAGCCCCCGGCCGCGCATCGTAGCGGCTGGAAAGATACGGTGCGCGTTGAGGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAATCACCCGGCAGACAGGGCGCATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATACCGGGATGATGCTGGGTTTTACCGTAGCGTAATAAAAGTGGGTGGCTGCAGCGGGATAATTGTCGGAACATGGTTAACGCCTCGCGTACCCTTTTTTTTCGTCCGTCCTCAACCTATTGATTTATATCGCGTGGTTGTCAGGGTGAAAAAAAAGGGTTAAGCACAATAAAGTGGAAAAAAGTGAATGCGGTAAGCCGTTTAGCGCTGTAGAGTAACG # Right flank : TATATTTGCAACGGTTCTCGCTGCCTGCGGTTGCGTTAAAACCGTATTGAAAGATAAGCAAAGAGGTATGTAACTTTCCAGCCAATATCATCATTTCACAGATATCCGGGAAGCAAATAACCGCTTCACAAGGAAGCGCCATATGGAAATGATTAAGCCCTCCGATTTAAAAACCATTCTGCACTCAAAACGTAGCAATATTTATTATCTGCAATACTGCCGGGTGCTGGTGAACGGCGGCCGGGTGGAATATGTTACTGACGAAGGTAAACAGTCTCTGTACTGGAATATTCCTATCGCCAACACCACTGTGGTGATGCTGGGTACCGGTACATCGGTAACCCAGGCGGCGATGCGTGAGTTTGCCCGCGCCGGGGTCCTGGTCGGGTTTTGCGGCGGCGGCGGAACTCCGCTGTACGCGGCCAATGAAGTTGAGGTCGATGTCTCTTGGCTGAATTCACAAAGTGAATACCGCCCCACGGAATATCTTCAGCACTGGG # Questionable array : NO Score: 4.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-1.46, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3056187-3055180 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023567.1 Erwinia pyrifoliae strain EpK1/15 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3056186 29 100.0 32 ............................. CCTTCCAGCCCTCTGAGTGAGGGCTTTCCGTA 3056125 29 100.0 32 ............................. GCTTAATGCCTTTGCCGATGCATTTTCCTTTT 3056064 29 100.0 32 ............................. ACAGTCAACCAGTACCACTCCATTTTTTTCGT 3056003 29 100.0 32 ............................. AAAGTTTGGCAGATGCGCTACAAGATTGAAGG 3055942 29 100.0 32 ............................. GAAAAAATATCCGACCTCCGCGAAAAGCAGGA 3055881 29 100.0 33 ............................. CCTGGTTGTAGGAGTGGGGCCGACCCGTACCGG 3055819 29 100.0 32 ............................. GCCACTAGAATCAGCAGCCCGCATCAATTGCC 3055758 29 100.0 32 ............................. ACGGATGTTGATATTGGGGACGTAATAGGTTG 3055697 29 100.0 32 ............................. CTGGTTGCGTGTTGATGGCTCATGCCGTAATC 3055636 29 100.0 32 ............................. GTCAGGTAAAAGGACACTCGGTGGAAATAATT 3055575 29 100.0 32 ............................. CATGGCCACCCGGCCAACCACGATCCAGTTAT 3055514 29 100.0 32 ............................. CTGCAATAGCAGTACTCGTGCCTTTTTCTTAT 3055453 29 96.6 32 ............................A TATGAATGAATATCTACGCAGTAAATGGGAAT 3055392 29 100.0 32 ............................. GTGATCTGCGCTGCTTCTGCCACTGTGCATTC 3055331 29 100.0 32 ............................. TTGTCGCAATCGCTGCTGGTGAGTGGTTCGTG 3055270 29 100.0 32 ............................. TGCGGGTTGGCCAGATTGGGCGCACGGCTCAT 3055209 29 96.6 0 ...........A................. | C [3055200] ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.6 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : AACGGTGCTTGCCGCCGGAGAGATATCCCCACCGCCACCCCCACCGCCACCCCCGCCGGATGCCCAGCCGGTTGCCATTCCTGAACCTCAGTCGCTTGGCGATGCAGGGCACCGGAGTTCGTAAAATGAGTATGCTGGTGGTGATTACTGAAAATGTTCCTCCCCGCTTGCGGGGACGTCTTGCCGTGTGGCTGCTGGAAGTGCGTGCGGGCGTGTATGTGGGTGATGTTTCGCGCCGCGTCAGGGAGATGATTTGGCAGCAGCTGGATCAATTATACGAGGAGGGCAATGTAGCGATGGTATGGGCCACCAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGGGAGAATCGGCGTCTGCCGGTGGACCTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTTTGATAGGTGAAAACGGTGCTTTTTCAGACAGGATAATCTGGTAGATTTTAGCGGGTGGAAAAAACCTTTATAATTTAAGTGGTTGGTTCTAGA # Right flank : ATGAAGGTCGTTACCACGCAATATGTATTATTGACAGATGCTAAGCGGGCCTCCTTTTAAACCAGCCAGAATACAGCTATCTCTGTAGCGAAAAAGGTGTATTTGTCCGGTAAATCCCTCTTTGGCTGGTGGGTCGATATATTTCCCCATGCGTGGGTCGCTGGTTAAAATGCCTGCTATTCTGAATGACTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGCGGCGTTCAGTTTCGATAGTTCTTTCTGAAGAAAATTCATCTATTTTTCCCTGTGGACCACCAATTGATACTTGTGCAGAGTACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGACTGATAATATACCGGTCAGGTTCATCGTAAATGATAATGCTTTTAGAAATGCAATCCTCCATATTGGAAAGTATTATCCACGGGGCGAAGAACCATCCGCAAGAAAATAATATGACGGCGGCAATAAAGAAGTAACAGCGCCTCATGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3067008-3066307 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023567.1 Erwinia pyrifoliae strain EpK1/15 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3067007 29 100.0 32 ............................. CCTCGCGTCCGTGCGGGGCTTTGCTATCATTA 3066946 29 100.0 32 ............................. TTTATGACGCTGATTATTATCAGGCTAACCAT 3066885 29 100.0 32 ............................. CCGGAAATTTATTTGTGAGTCGGGGAATTTGG 3066824 29 100.0 32 ............................. CGGGTTAAATGACGTCATGGCGACAGCATGAA 3066763 29 100.0 32 ............................. AGTATCGAATAACGTTACCGTGGCCACCATCC A [3066742] 3066701 29 100.0 32 ............................. GGGAGAACTTGCTTATTATCTCAAACAAAGCG 3066640 29 93.1 32 .............A......T........ CCGTGTTGAAGCCATTGGTGTTACCTCTATTT 3066579 29 96.6 32 .............A............... GACGTAACAGTAAATGCGCCGGTTCGCGACAA 3066518 29 100.0 32 ............................. AGGTTAGAAACGAACAAGTCGGCATCAACGCC 3066457 29 100.0 32 ............................. CTTTGATGATAATTTTCTTGCTTCTATTACTA 3066396 29 100.0 32 ............................. TCCCGCTTTCACACAGGCCGGGATTAGCCGCT 3066335 29 93.1 0 ............CC............... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.6 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AAAAGGCAGGGGCGGTTAACTCCCTGTCTTTTTCAAGTTCCTTCAACCCTTACGGGCGCCCGGTCAGTTGCTTAATGGTAACGATAATCAGCAAACTGACGTGCAGTATCTGCAACGTCAGCAGGATTGCTCCCTGCGTTATCACCTGCATCTCCTTGATAAAGGAGCGTGCGCGCAGCCGGTGAATGCTGTTGGGCTACCCTTCACGGCGCGTACCGGTTGTTAGCAGGTACAGGCAGCACCGTTGCGCAAAGCGGCCACCAACCGCTGCGGAACAGGAATCAACCCGGTCTTACAAACCGGTTTTTTTTCGTCTTTACGCTGCCATTTCCGCTATATTGAAGATGTTCACTCAGCCGTTTGCCCCGCATATGTGGCCGTGTATCAAGCCGATTTTCCCTGCTTTAAGTCGCGAATCCGTGCGCGCTTTAGAGTGGGAAAAAGTTGGTAGAAATATGGAGTGGTAAAAAACTTTCTAAGATCAGTGAGATAGTTTTAGA # Right flank : CTGGTACATTTATCCCTACCGTTCTATGATTAATGCGAATCGCACGATCTGTGCTAATAGCATGATTAAGGAGGAGACCATGTTAAGTTTTACCGCCAATCAGGCGAAAACGCAGTTTGGGGATTTGATGACCAAAGCGCAGCGTGAGCCGGTTAGCATCACCTGTAATGGCCGTCCTGCGGTTGTTGTCGTTCCTGCCGAAGATTACGCGGTGCTTGAACAGCTGAAGCTGGAGGCTTTACGAACCAGGCTGACCCGCTCCATAGCCCAGATGGAAGCCGGACAGGTTCACGATGGTGACGCGGTGTTCGACGAGTTGATGAAGGATCTGTAATGGGAAAATTCACACTCACGGATGATGCTAAAGAGGATATGAAGGAAATAAGGGCATATTCTGTTCAGCAATGGAATAAGGAGGTGGCGAAAGTCTACCTGGAAGGGATGCGCCTTACCATGCAGATGCTGGCGAATCATCCTGATATTGGTGATGATGTCAGCGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //