Array 1 68808-70286 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXL010000010.1 Listeria booriae strain FSL L7-0335 NODE_10_length_120238_cov_24.718353, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 68808 30 100.0 36 .............................. AATTATTTTGAATTTGCAGGTAGGAAATCAACAGAA 68874 30 100.0 36 .............................. TAATACAGTTCCTTATACAAATTATCAAGTTCACGA 68940 30 100.0 35 .............................. AGAAACTTATTTAGATGCCTTTGAAATTTACTATG 69005 30 100.0 36 .............................. ATAGTTTTCATCATTTTCACTCCTTATATCCGCATT 69071 30 100.0 36 .............................. CCATATAATCCCCTGGCGATTCTAAGTCAACTGCAG 69137 30 100.0 34 .............................. CTTCTTGCCGCGGGAATACTTTGAGCGGTACTCC 69201 30 100.0 36 .............................. TAACTTGCATTTTACCGAATGAGTTGGATAGCGTGT 69267 30 100.0 36 .............................. TATTTTGCACGATCGCCTGGTCCCACAGCGGGCGGA 69333 30 100.0 35 .............................. TTGAGAAGCGCTGCCGCTTGACCGCCTGGTTTCGT 69398 30 100.0 34 .............................. GGTGTTTGATCCCAGTAATCCCAATCGATTCCAC 69462 30 100.0 36 .............................. TGTGCTTTTTAACAGTCCCGACTGTAGCCGTGTCTA 69528 30 100.0 37 .............................. TCTTGGATTTTGCTTTTTGGTGACAATCCGCCTTCGC 69595 30 100.0 36 .............................. ATTTAAGTATTAACTTTTTTGAGTGGGATAACTTAC 69661 30 100.0 37 .............................. CAAGAACAAGACTTGATTTTGAATCAAGTACAACTCA 69728 30 100.0 36 .............................. TACTGAATAGCAAACGACTGTTTAACCCTGCTAAAT 69794 30 96.7 36 ..........................G... AAAAAAGCTGTTATTATTTCTAACAATAATAGTAGA 69860 30 100.0 36 .............................. TTATTTATTCTCTCCTTTATCCGTCAAAAATTTTGT 69926 30 100.0 36 .............................. TTTATTCAGTCGATTGGCTGGTGTTCGATAGGCGCA 69992 30 100.0 36 .............................. TTACTATCAAACATGCCAGCAAAGGTTCCAATTTTA 70058 30 100.0 36 .............................. TCTTTCTTTTCCATTTCTTCACACCCCTGTGATATA 70124 30 100.0 37 .............................. CTAATCATTGGGAATGCAATGCACAAAGGTATTGAAA 70191 30 93.3 36 ........................A....C GCCTTCATCGCAACATCTTGTGCCTCATTAGGCAGA 70257 30 83.3 0 ....................C..CA...TC | ========== ====== ====== ====== ============================== ===================================== ================== 23 30 98.8 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTCGCCGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAATGGATTAGGATGGTTTTCGAGAAGGTGAAAAAAATAAGTAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTAAGAGGGTACTT # Right flank : CCCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATATATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAGCTCCACTCGACATATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCAAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATATCCAGCCCATAAAAAAGGATACAAATACTAAAACTACGAGAAC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 212652-213466 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXL010000005.1 Listeria booriae strain FSL L7-0335 NODE_5_length_356377_cov_29.504098, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 212652 30 100.0 35 .............................. TTAAAAGAAACTTTTGTCTCATTTTCAATATATTC 212717 30 100.0 36 .............................. AAAATCACAATTGAGACTGTAGAAGACTTATACAGC 212783 30 100.0 34 .............................. GAACATTTCCATAAAGCATCCGGAATCCTTCATA 212847 30 100.0 36 .............................. ATAGCAATACCTAAGATAATCATTGCGTCTCTCTCC 212913 30 100.0 36 .............................. TGAAGAACTCATCAATAGAAAAGACGTATAAATCTT 212979 30 100.0 34 .............................. ACGAACTCTACGGCCTTATTTACGAGTGAACCCG 213043 30 100.0 35 .............................. GCAGTTAAACACGAACTAATCCCCATCGTTCCTAA 213108 30 100.0 35 .............................. AAGGAAAAGGTAGACGGAGTAACTACCAAGCAGGC 213173 30 100.0 36 .............................. TAAAATCATTGACGTCAAAATACGTGTTGAAAATCT 213239 30 100.0 36 .............................. ACATTCCAGTTTCAAAATTCGCTCGTCTTCATCAGC 213305 30 100.0 36 .............................. TCATAAATGTCTAAGACAGCATCGATAGTAGGTAAT 213371 30 100.0 36 .............................. TACGAAATGCTAAACGCTGATTCTGCAGTATTGTTA 213437 30 96.7 0 .....................G........ | ========== ====== ====== ====== ============================== ==================================== ================== 13 30 99.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AGAAGGCAAATGGGCTGGCATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGGATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAATAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGAAAGAGGGGATGAAAATTCTAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTAAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTCGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGAGTAGGCGTTGGTGAGGTACCT # Right flank : TATCCATTTCATGTAATCCTTTGCTTTATCTGCCAATTGTCTTTATCTAAGTAATATGAATCCAGACTAGATTGCTCACAGAAGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCTCTAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGTGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCTCAGGATTTGGCGTCTCAGGTTGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 251127-250827 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXL010000003.1 Listeria booriae strain FSL L7-0335 NODE_3_length_421904_cov_29.006197, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 251126 36 100.0 30 .................................... GTAGTTTACTGTTATATCGGATTGACTGAT 251060 36 100.0 30 .................................... ACGGAACACACTTATTTGACTTTGACGATG 250994 36 100.0 30 .................................... TTAATGAGTATGCAGATGAAAAAGACCTAG 250928 36 100.0 30 .................................... AAAGACAACAAGAAGGCATTTATACAGTAT 250862 36 86.1 0 ..........................GT.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.2 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : ACTGTACAGATATCCCCATATCGAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATGATTTCTTCGCCTTGAAGTGTGATAGGTAACGCTTTGCTACCATCTTTCTTCAATAAACGAATAACCTCGTCATTTTTGAGAAACGGTTCTAGCGAGTCCTCCAAGTAAAAAACACCAAGAACTATTTGCTCCTCCTTTACGAAGAGATGGCTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGGCTGTCTCGTGAGTCGAGGAAGAAAATAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCTAAACTAAAATAGGATACATCATTGTTTTGCAAGTAAATACTGCTTCATTGACTACCGATTTGATGAGCATCACTTTGAATGCTCTATTTTCTATGACTACTAGCCTCCGATTAATTAAAAATAACTTATCCCACTTATCCACAGTAGAG # Right flank : TTTAATCTTTGTAATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAGCGCCTTCACAATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTGTCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTGGGTTTTAGGCTTGCTATTACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGGTCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATTTTTTGGTGATAAATAATTTAAATGCGCTATACGATTTCTGTCATTTCTCTTAGAAACAAACAAGTTCTCCCCTACCATGAATTTATGAAGTTTTTCAATATGTTTTGGCCATGTTTTCCTGCGTATTTTTTTCCAATATTTTTCAGTAGTATTAATCCAGCTATCCAC # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 354527-356123 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXL010000003.1 Listeria booriae strain FSL L7-0335 NODE_3_length_421904_cov_29.006197, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 354527 30 100.0 36 .............................. GCAGCAACCTCGATTAAAAGATTGTGTATGACCTAA 354593 30 100.0 35 .............................. GTATCTGGATGACAGTAGACTTTCACGCGACCGAA 354658 30 100.0 35 .............................. GAAATAAATGAGTGTGTTTGGAGCATTTTTAATAG 354723 30 100.0 37 .............................. AAATAGCTTCGTTGGAAAGTAAGCGTCTTGCCATACA 354790 30 100.0 35 .............................. AATTCTAAAACTAGGCGTGGGAGAGTTGGCAAACA 354855 30 100.0 35 .............................. AAAACAGGTGGCAATGTTACTAAATTCACTTCTAA 354920 30 100.0 34 .............................. AAAGAATTAGAAAGCGAAATCGCAGAGGCTTACG 354984 30 100.0 35 .............................. ACCCATATATCCTTTTTGTGCTTTTCGTAGTAAGC 355049 30 100.0 34 .............................. ATTTTGCGTTGACTGCGGAAGAACGAGACATGTA 355113 30 100.0 36 .............................. CTTGTAATGGTTCCTAATGGATTGTGTAGGCTTATT 355179 30 100.0 35 .............................. TCAAAAATGACAATCCGATCCGCGTACTGATCATC 355244 30 96.7 38 .................T............ GTCGTAACTGATTGAACAACGTTCTGAATCGAGCTTTT 355312 30 100.0 36 .............................. AAAGTAGCTCAAACAGGTAGTTTGTTTAGCAAAGCA 355378 30 100.0 35 .............................. ACCTTTTGAAATCATGAATTAGTTTTTCTCTTTCA 355443 30 100.0 37 .............................. AGAACATTGAAGTAGCATCTAAAAGCTACGAATTAAA 355510 30 100.0 36 .............................. ATCGGAGCAGTCACAATAATTCCAGCTTTCGTGATA 355576 29 96.7 36 ...............-.............. CAAGAACACGTTTACTTAAAATACGAAGGTAGTTTA 355641 30 100.0 36 .............................. AGCTATGAGCAGAACTTTATCACATTGCTTGAGTTA 355707 30 100.0 36 .............................. ACTTTAAGTGCTTCACGGTCTCTGCCATAACAATAA 355773 30 100.0 35 .............................. ACCGATAGTAGCAAAAAAATCACAGAATATGCGCT 355838 30 100.0 36 .............................. GTGGATGATGAACGCTACACTGATGAAAATAGCATG 355904 30 100.0 37 .............................. CTGCTGGACCAAACATTTTTCCGGCTTCCGTAGCCAT 355971 30 100.0 36 .............................. TATCTATTTTCAGGATGAACATGCAGATCGTAGAAA 356037 30 90.0 27 .............C...A......A..... TAGGAAAAGGGCGCACTTATACACCCT Deletion [356094] 356094 30 70.0 0 ......CC.G.....C.A.....CA...CA | ========== ====== ====== ====== ============================== ====================================== ================== 25 30 98.1 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTGATTTACGACATAGCAATGGACAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACACCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTAGATAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGGTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGAGGTACCT # Right flank : ACGGTCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGTCCTCACAAAAAATCCTCGCGATAATCATTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACATTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCGGCCACATCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGACCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCAATCTCCCCAATGTCGCGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //