Array 1 6514-7021 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGP01000007.1 Yersinia pseudotuberculosis strain 19-YE00070 NODE_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6514 28 100.0 32 ............................ AACACGTTGGATGAATCACAACAGTTAATTAT 6574 28 100.0 32 ............................ AGATCGTTCAGGATGCAGTAAGCCAGCCATCA 6634 28 100.0 32 ............................ TTTTTCTACGTCCTTATCGGTAAACAAATCAG 6694 28 100.0 32 ............................ GTCACGCAGAACCTATCACAATGCGGAATGGG 6754 28 100.0 32 ............................ AGATTGATAAGCCTCGCGAACCAGCTCGCCAC 6814 28 100.0 32 ............................ GTTAAATTCGGCATTATCGAATCACCACCAAA 6874 28 100.0 32 ............................ GTCTTCATCAACGTGATAAATCACTTCAGCCT 6934 28 100.0 32 ............................ GTCAACGCTTCACTCCCTGCGCGGGGTATAAC 6994 27 89.3 0 .....................CC.-... | T [7020] ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACCCCACCCCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTCATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGATCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15196-16906 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGP01000004.1 Yersinia pseudotuberculosis strain 19-YE00070 NODE_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15196 28 100.0 32 ............................ CAAATAAGTATAACACTATAATTAATAATTGA 15256 28 100.0 32 ............................ TTGATGAGCCATGGTGTTACCTCCAGTTAATA 15316 28 100.0 32 ............................ TCATTGAAGTAATTGTTTTAACATCACTATAA 15376 28 100.0 32 ............................ ATTAAATCAGATTTATTAACCTCATCGCTATT 15436 28 100.0 32 ............................ AAGAGATTCACCGGCCATCAACCGGGCGCAGG 15496 28 100.0 32 ............................ CGCTGGATGTGAAGAGTTGCAGGGATGCAAGT 15556 28 100.0 33 ............................ CAGAAGCATTGATATCTTCGGAATGAAGCTTTC 15617 28 100.0 32 ............................ TTGATGCATAGACAATTCATGGATAGTAAGCT 15677 28 100.0 33 ............................ CGGAACTTTCATCATTACGCCGCGAATATGATA 15738 28 100.0 32 ............................ GCCATCACCAAGTTTCGAAATAATCTCCAACT 15798 28 100.0 32 ............................ AATGTAATCCGGCAGGCCGTAGACTTGCTGTT 15858 28 100.0 32 ............................ TTCAACTGGGATGCTGAAATCGGCGTTTGTTA 15918 28 100.0 32 ............................ GGTTTGGGATGGGTTGCAATATACTTGCATTC 15978 28 100.0 32 ............................ TTCTGGCGCTCAGATGATGAAGATGGTGAACG 16038 28 100.0 32 ............................ TATGCAATACGCCATTGCAGGGTATCCCGCAT 16098 28 100.0 32 ............................ TAGGGGATGGATCAGGGCGGCGGTGAGTCGGG 16158 28 100.0 32 ............................ GGAATGCGCAGCACGGCATAACCAATTGATAA 16218 28 100.0 32 ............................ ATCGCTAACCGACGCATCATAAATCTTAGACG 16278 28 100.0 32 ............................ AACTGAAGTCGATGTTATCCAAGCTAAATATA 16338 28 100.0 32 ............................ GTAAGTCCGAATCATTAACAGCGAGGTAGGTA 16398 28 100.0 32 ............................ GGCGCACGATTAAACGAAGCGCTGGCCCTGAC 16458 28 100.0 32 ............................ GAACGAGAGGCGATATGCCAAATCCAAAAAAT 16518 28 100.0 32 ............................ GACGAATGGCCCGGCATCACCCGTTGGCCTGC 16578 28 100.0 32 ............................ AATAGACTCCCAATATTCACCTAACAATTTAT 16638 28 100.0 32 ............................ GAGTGTTAATGTGACGCCCAGCAATGCGACGC 16698 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 16758 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 16818 28 100.0 33 ............................ GCCCAGGCGGCACTCAACGCCAGGGCGGGGACG 16879 27 85.7 0 ...................-A.A.C... | T [16903] ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGGTTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTCTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAATGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //