Array 1 75-2744 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMHH01000116.1 Acinetobacter baumannii AB_2007-09-110-01-7 AB_2007-09-110-01-7_117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75 29 96.6 31 ............................T GCAGTTCTGCGTTACGTGTTTCAGGATGCAT 135 29 96.6 31 ............................T AAAGGGCGTGGCAAAGGCATTACGTGTGAAA 195 29 96.6 31 ............................C TCTACACCTTCGCGAATAAGTACGCAGGGCT 255 29 96.6 31 ............................T TCATGCGTGATGCAAAGCGACTTGCTGCAAT 315 29 96.6 31 ............................T GAGCAGGTCGGTTATTCTGAACCTGAAAATA 375 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 435 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 495 29 100.0 31 ............................. GTCAGGCCCTAGCTTTTGAGTCACACTTTCG 555 29 96.6 31 ............................T TCTGCACTCTGAAGATAAACATTACAAGTAA 615 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 675 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 735 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 795 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 855 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 915 29 100.0 31 ............................. TTAGAACCAAAAGTTACTTCAAAAGAACGAA 975 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 1035 29 96.6 31 ............................T CTACAGCAGCCGTCCAACGGTGTGTATCGAT 1095 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 1155 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 1215 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 1275 29 100.0 31 ............................. ACCGATGAAGCACGAAACACAATCATGCTTT 1335 29 100.0 31 ............................. TACGGCGGATGATGTGGTTCGCCTTCATAGC 1395 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 1455 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 1515 29 100.0 31 ............................. GAAGTACGAATCAATGTGAATGAATAACCAA 1575 29 96.6 31 ............................C AGTAACAGCAAAAACAAAAACAGTAACTAAA 1635 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 1695 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 1755 29 100.0 31 ............................. TCACCAGTGCCAGTGCCAGTGCCAGTGCCAG 1815 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 1875 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 1935 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 1995 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 2055 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 2115 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 2175 29 96.6 31 ............................T TCACCTGCAAAGTAAATCGCATAAATCTCGC 2235 29 100.0 31 ............................. ATTTCAGCGTCAATAGTCTCAATATGATCGA 2295 29 100.0 31 ............................. TCCCGGAAGGCTTGGCTAAACTTGTACTTTT 2355 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 2415 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 2475 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 2535 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 2595 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 2656 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 2716 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 45 29 98.1 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : TAGCAACTTAGGAAAACTTTACCTTCAAAGGCTTTATGCAACAAAGCCGTTTTAAGGTGTAACTGGTGCAATCAG # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGTCAATTGAACTAAAAACATAAATACTTGAATTTTATAATATTTTGAATTTAATAAAAATTATGTGATACATATAGTGATACAAAGTCGATTTAATTAACTATGAAACCTGAGTTTATACAATTATCCCAACTTTTCACAAAATCTGTTTCATGATAGTAAATACTAGCTTTCAAATTATCTTTTAATGCCTTTTTCATTTCTAATGAACGTCCATCAAGTTGGTCATCCGTATATTCAAGATAGTAATATTTGAGTAAATATGAAAACCCTGAGCCATCTCTAATTGATTGACTATCCCCATATTGATCTGCAAACTTTGCCAAATTAGGGAAATCAAAACTGCTAGAATTGTATGACCACTGACCTTTGACATAAATAGTCAATAAATTCATAAAAGTATCTAAAAATTCTTTTTCAGACATTCGGCTAGGATTCAT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 70-518 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMHH01000192.1 Acinetobacter baumannii AB_2007-09-110-01-7 AB_2007-09-110-01-7_193, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 70 27 85.7 32 TAA...-..................... TGCTCCTGACGAGCTAAGACGGCGCGGCCACT CC [75] 131 28 100.0 32 ............................ ATTGAAGAAATCAGGAAGAATGCTCCAGAGGG 191 28 100.0 32 ............................ AAACTAAAAATACAAATCAGTTGTTTTGATAT 251 28 100.0 32 ............................ TAGATTGTATGTAAATGATGCCAGTGCATCAA 311 28 100.0 32 ............................ ATTGTGGTAAGCTGTTGCATTAAATTTTATAT 371 28 100.0 32 ............................ TCATAGATAAATAGACAAAAGGGGCCGTTAAG 431 28 100.0 32 ............................ ATTGGATGCCATTACCCAATCCACCAAAAGCA 491 28 89.3 0 ..........A.G..............G | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTAAGTCTAGTAATAGCACTGGCCATACTGACCGTGCTTTGTCCATGATCGCGTGAAGTTGTTTTTCAAT # Right flank : GTATTATTTTCAGTTATACTTATGCAAGCGAGATATTCTGTAAGTAATTCTTGTAATAAAAGCCAATTATTTCAGTGAGATAATTGGCTTAAGTGAGAGTTGCGATTATCCGCTAATTCGTCGGTCATCCCAATAACACGGCACTACAATCAAATGGTTCTCATGTAACCGTGACCATAATCGGACACCTAAATCCCGCTGCATATTTTGGACTGTGAAATTGGAAATCAGTAAGGTAGATTTCATATTGTCATAACGACTATATAGAACCTTATGTACCATCTCTAAGCGTTTTTCATGCCGGTCATGCAGGCCATATTCATCAATCACCAATAAATCAAAACTGGAGAAATGGTCGATGACTTCTTTCTCAGAGCGTGAAGTGTCTGACCAGGTATCCATCATTTTTTGAGCAATTTCTGCACTGGTATAGTAGCGTGCAGATTTTCTACTGTTATGCAGAATGTTGCGAATAATTGATGCACTCAGATGGGTTTTAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 824-73 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMHH01000048.1 Acinetobacter baumannii AB_2007-09-110-01-7 AB_2007-09-110-01-7_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 823 30 96.7 30 .............................C AATATGCTAATCCACCTTCAGAATCTGCAC 763 30 96.7 30 ............................A. TATAAATCATCATTAATAGCCATATGTACG 703 30 93.3 30 ............................AT CATAGCAGCCCCTAAAAGCTCAGGCGTTAA 643 30 93.3 30 ............................CT GGAAGAAGCTAAATGCTATTTTTCAGTAAC 583 30 93.3 30 ............................CT TAAGTAATTTTGAGACGGCACTAGATAGAA 523 30 100.0 30 .............................. CGTGTTGCATTATCAAGTATGCAAGTTGGG 463 30 93.3 30 ............................AT ATGTAAATAAAGAAAGTCCAGCACCCTTAA 403 30 93.3 30 ............................AC CACCAGTCGGATTTCCCTGTGGGTCTTTAA 343 30 100.0 31 .............................. TGCAAATCAATTTAAATAAATTTTAAGTCAT 282 30 100.0 30 .............................. GAAGATTTCGGGCTTTTTCAATAACACCAG 222 30 93.3 30 ............................GG TAGCCCATCTATTAAACTCAACCCGAAACA 162 30 93.3 30 ............................CG CAAAACAGAATTTACTTTGACACTAAAGAT 102 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== =============================== ================== 13 30 95.6 30 GTTCATGGCGGCATACGCCATTTAGAAATA # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : GACAAGTTAGAAAATGAGAAGCCTTTATAGTCAAATCATTATAAAACCAATACAATGGTGCAATGAGTTATTC # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 55-5490 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMHH01000274.1 Acinetobacter baumannii AB_2007-09-110-01-7 AB_2007-09-110-01-7_275, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 55 30 93.3 30 ............................CC TGCTCTAGCCTTCAGATCGCATAATGCCGA 115 30 93.3 30 ............................TA TAAAAAAACGTGGCTGCGGTGCGTACGGTA 175 30 96.7 30 ............................G. GATCAATATTCAAAAATTCAAGCTTATCAA 235 30 96.7 30 .............................A CTAATCGGCAATCCTCTGTCAGCTTGATAA 295 30 93.3 30 ............................TA AATACAATGGAACAGAGACTGTTAAGAATG 355 30 100.0 30 .............................. TCATTGGTGGTGAGGATGAGGACCAATGGA 415 30 93.3 31 ............................CA TTTTTACGCATAACAATATTACCTTTACGCT 476 30 93.3 31 ............................TA TTTAAACCATTGCGTTAAAAACAATTCATAT 537 30 93.3 30 ............................TG CTGTTGTGCTTGTTGCGGTTGGGATGCTTC 597 30 96.7 30 .............................C TAATTCAACAGGTACGGCATACGTTAATCC 657 30 93.3 30 ............................TG ATGATGTTTGTTGGATTGCAACTGATGAAG 717 30 93.3 30 ............................TA GTGAAGAAGTATCAAACATTGTTCAAGTAA 777 30 93.3 31 ............................TG TTAGAGCCACACAGCAAGCTACGCAGAATGT 838 30 96.7 30 ............................T. CTTCATCTTTAAATTTTCGCATTGCTGTGC 898 30 96.7 30 ............................T. TTAGATCGTATTCGTCGTGAAAAATTACCA 958 30 96.7 30 ............................T. TCACAAATGAAGTTCGTGCAGTTGAAGAAC 1018 30 93.3 30 ............................TC ACCTGACCACTTGGCTGAATGGTGCTTTAT 1078 30 93.3 30 ............................TG ATCGGTTGCACCTGAAGGATATTTACCAAG 1138 30 100.0 30 .............................. CTGAAACTGAGCCTCAGTCTTAAATGGAAC 1198 30 93.3 30 ............................CA TGAAGATTACACCCACATGATCATTCATCC 1258 30 93.3 30 ............................CA AAAAATTAATAACTATTAACCCGCTTCCTC 1318 30 93.3 30 ............................TC GCAAAATTAGTGAGAACAAGACTGTTTATC 1378 30 96.7 30 ............................T. GGGGTGACATACCCGCTAGACCATTTTTAC 1438 30 93.3 30 ............................TA ACGTGGTCAAGCCGCCGAAGATTCCTGAGA 1498 30 93.3 30 ............................TC TTACCGTTCCATCTCTTCCAATTGAGAATA 1558 30 93.3 30 ............................GA ATAAACATGACCAGCATCATAGCCATCAAC 1618 30 93.3 30 ............................GG CTTTGCAAAACCTCTTTTACAACGAGCTTT 1678 30 93.3 30 ............................CA GACATTACAGCCGCCCCAGTTGCTTCCACC 1738 30 100.0 30 .............................. TAAGGGGCGATGCTTTATTGATCCAGCCAC 1798 30 96.7 30 .............................C CGAAATGGTACCAAGTCTGAAAACCGCATA 1858 30 96.7 30 .............................A TGACAACTGATCCACCGTTTTGCCAAGTTT 1918 30 93.3 30 ............................TG TCCCTGCTGCAATCATTTCAAGAATCTTTT 1978 30 93.3 30 ............................TC TGAGATGTACGCTAAACAATTCACGAATGC 2038 30 93.3 30 ............................TG AATTTTACAAACTAAAGCTGGACGGAAAAT 2098 30 100.0 30 .............................. CGATCTTAGCACCAAAATCGTAATATGTAG 2158 30 96.7 30 ............................T. GAGCTCTCTCACAACTAAGCGAATTTAAAT 2218 30 96.7 30 ............................T. CTGGAAAGCCTATTATGGATAGGATTATCG 2278 30 96.7 30 ............................T. GAGCACGTTCACAGCTAAGCGAATTTAAAT 2338 30 96.7 30 ............................T. GTGATTGGCGCGAATCTATTAACAAAGAAC 2398 30 93.3 30 ............................TC TTGAAGTCGAGTATAGTTTTTAATCTTATG 2458 30 93.3 30 ............................CA CCAAAATGGAGGGGAGACTACCCCCGAAAA 2518 30 100.0 30 .............................. AGAGTTTTCGAGAGTTCGATTAAGCACATA 2578 30 100.0 30 .............................. GTGAACGGCCAAGCATAATAATCAGGCCAT 2638 30 93.3 30 ............................TG TAAGTAATGGCGCACATCTTTTTTAGCTGA 2698 30 96.7 30 .............................A AGCCTGAATTGATTGAATCGACGATCTGAT 2758 30 96.7 30 .............................A CCATACCAAGCTGCAAACACAACCGCACAG 2818 30 96.7 30 .............................C ACCAGTTACAACGTAATTACCATCCAAGAA 2878 30 96.7 30 .............................C AAAAAGCTAAGTCTTTGGATGGGTGATGTT 2938 30 93.3 30 ............................CC GAAAATTTGTACCGCCGATGTTACACCAAT 2998 30 100.0 30 .............................. GAAGCTAAGAAATGGGAACACCTGCAAGAT 3058 30 96.7 30 .............................C GTAAAAGGACTTTACGGTTTGGGTCAGCTT 3118 30 93.3 30 ............................TC TGGATGTGGCCAAAGCAATTTATCGCAAAA 3178 30 96.7 30 .............................A CAACACCAATACCTCTGTTAAAATTTTCTT 3238 30 96.7 30 .............................C CAAACTTCTGTTTTAACTCTTCGCGTTGTT 3298 30 96.7 30 .............................A AACCATCCACAGGGTAACCATTAGCAATAC 3358 30 93.3 30 ............................CG ATATACGACAGGCTTCAAGGCGACCACTTC 3418 30 96.7 30 ............................T. CTGTTAGCTCTGCTGGATCATCAACGCCAT 3478 30 93.3 30 ............................GA ACTGAAACAGTAACCCTCAAATGTTTAAAT 3538 30 100.0 30 .............................. TTTCAGCGAATGGTGTTGTAATTAGTGTTG 3598 30 96.7 30 ............................T. TTGCAATCATGATCCGGACGATAAAAAAAT 3658 30 93.3 30 ............................GC TTAAAGTTTGGATGAAAGCGCATAAGGGCG 3718 30 100.0 30 .............................. GACGAACCTGTCTTACCTTCAGATCCTTCT 3778 30 100.0 30 .............................. ACACTCATCGCGATTCTATTAAAGTCTGTT 3838 30 96.7 30 ............................T. CTTTCCCGATGCTTCAAGTGTCTGGTGAGT 3898 30 96.7 30 .............................A AATGAGAAATTCATAACCATATACCCCGAG 3958 30 93.3 30 ............................TG AAGAGTTAATCAATATTATTTCTTGCTCTG 4018 30 93.3 30 ............................TA TGAGAAAGAAAAAAATTGCGACAAAGATAA 4078 30 93.3 30 ............................TA CTTGGGAAGAGCGTTGCGGGGCTATTTCTT 4138 30 96.7 30 .............................G CTAACTTACCACCGTTTGCAAATGTTTATA 4198 30 93.3 30 ............................TA AAGATACGTTTTTAGCTTTTAATGTGATTT 4258 30 93.3 30 ............................GC AAAACTTAAAAAAGCAATCCAGACGCATGC 4318 30 100.0 30 .............................. TAGCTAAACCTTCAATCTCGCCTTCAGCTA 4378 30 93.3 31 ............................CC CTGAAGACACTTCTTTGAAACGCAACGTCAC 4439 30 100.0 30 .............................. GTCCATTTTGCGGATACGCAGATGGGTTAG 4499 30 96.7 30 ............................T. CCCCCTTGAGCGCTTCAACCATCGCCTTAA 4559 30 96.7 31 .............................A ACTTAGATGACAAAGTATTAAAGCTCTGTGA 4620 30 93.3 30 ............................GG GTATAAGTGAAGTAAGTATCTTGAGGAATA 4680 30 96.7 30 .............................A TGGATGGATATGGCATAGGCAAAGACGGCA 4740 30 100.0 30 .............................. AGAGAATCGGTACTGGATAACCTTGAGCGG 4800 30 100.0 30 .............................. CCTGAGCGTCGTTGGAAGGCGGACTTCCGG 4860 30 96.7 30 .............................A ACTCTTGCAAGCTAGCAAGATAAGCAGGAT 4920 30 96.7 30 ............................T. GAGAATTATGAAAAAGCAGGCTTCTATGAA 4980 30 96.7 30 .............................A CAGACATACTTCTTTCATTTGCATCGCCAG 5040 30 93.3 30 ............................GA GGCGTAAAGATGCGGTGTTGATCTTGCACG 5100 30 93.3 30 ............................TA CGTAATAAGTACACGGTGCAATCGGTGCGT 5160 30 93.3 30 ........................A....G AGTTTTAAACCCGCGCTACACCTTTCTAAA 5220 30 93.3 31 ............................CC AAAAAAAATAGCCCTACGTTTAAGCATCGAC 5281 30 96.7 30 .............................A CGTGAACAATTGTTTTAGCTTTGAACATTA 5341 30 90.0 30 .............C...T..........G. TACTGGGTTGCGGAATATATTCGCAATTAT 5401 30 86.7 30 A.....AA.........T............ TTTGATCTTTACTTATTCTCGCTTCAAACA 5461 30 70.0 0 .......A...T.....T..C...AGCGT. | ========== ====== ====== ====== ============================== =============================== ================== 91 30 95.2 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : TTTCGAGTTTTTTTCGAATCTTGTATGAATAATAAAGTAGTTTGACTATAGAAGG # Right flank : TAAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4051-61 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMHH01000100.1 Acinetobacter baumannii AB_2007-09-110-01-7 AB_2007-09-110-01-7_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4050 29 100.0 31 ............................. CCCAAATACCTTCCTCAAGTTCACTTGCAGC 3990 29 96.6 31 ............................C TCAAGAGTTTCAGCGTCATAAGCTTTTTTAA 3930 29 96.6 31 ............................A TGTCGGCACGCGAATTAAAAGACGAACTTCG 3870 29 96.6 31 ............................A AAATCAAGCAACTACTGAAGGAAATTAAACT 3810 29 100.0 31 ............................. TGTTCGATGACTTGTATTTCATCGTCATCCA 3750 29 100.0 31 ............................. TCAGAATTTACATAAGAATCCTAATGGGAAA 3690 29 100.0 31 ............................. ATGGCAAATTTGAAGAAGTAAAAAGTCAGTT 3630 29 100.0 31 ............................. ATAGATGAAGCGGACATCGTAAATGCCCTTA 3570 29 96.6 31 ............................C TAATGACCCTTATAGCGCTTCTGGTAACTCT 3510 29 96.6 31 ............................A TGTGCGATCATTAGCATTAGGTGCAGATTCT 3450 29 100.0 31 ............................. TTATGCTCGATATTCGGCATACGGTTACCAC 3390 29 96.6 31 ............................A ATCCCCCCGATAAAGCTGTGGGGTTTGGTTG 3330 29 96.6 31 ............................A AACATGCCGATGAGTTTACGACCACCGAAGA 3270 29 96.6 31 ............................A TCCGGAGGATCACTAGGATCAGGCGGAGTAA 3210 29 96.6 31 ............................A CAATGCCCGCTGCTATCATGTAAGCAAAGGC 3150 29 100.0 31 ............................. TATGATGATTTACCCACTTCATTTACTAATG 3090 29 96.6 31 ............................A CCCCAAAACGTTGAACATTAGTAAGTGTTAG 3030 29 96.6 31 ............................C ATTAGTTTAAGAACGATTTTAAAAACATAGC 2970 29 100.0 31 ............................. TTCTGGGAGATTTTGAGAGAGGGCACACTGC 2910 29 96.6 31 ............................A TCATTACCCCAAGTAATGTAGTTATCGTATT 2850 29 96.6 31 ............................A ATGTATGTTTATTTTGATGCAGGCGGTAAAA 2790 29 96.6 31 ............................G TCAGCAGCACCTGCATCTTCATCCCATGTAC 2730 29 100.0 31 ............................. ACAAAAAGAAATGCTGAATTATTGGCAAAAG 2670 29 96.6 31 ............................C GTAAGTGTTACCTTACCTGCAGAAGCATCTT 2610 29 100.0 31 ............................. CAATAACCCAACCAATTGCCTCAATTAGCTG 2550 29 100.0 31 ............................. CTCCCTTAACATTAATACCCGCAACGATAAA 2490 29 96.6 31 ............................G ATCGTGAAATTTACCCAGTCAATGACAGCAA 2430 29 100.0 31 ............................. GTTTAAAAACATTGATATACTTGCCATATTG 2370 29 100.0 31 ............................. CAATATGCTAATCCACCTTCAGAATCTGCAC 2310 29 96.6 31 ............................A ACAATATGAAATCATTCACTCTGACTACAAA 2250 29 96.6 31 ............................A GTCAATGACAGCAATTTCATTGTCAGCAGGC 2190 29 96.6 31 ............................C CTGAGCCATTAGCTAAAGAAAGCAGCTTTAA 2130 29 96.6 31 ............................A GTTGTTCAAGCTGTCTCTGCTGTAAGTCAAA 2070 29 100.0 31 ............................. CCATTGTCTTAAGGATTGGGTCAAACGCTAC 2010 29 100.0 31 ............................. AAAGATACAAAATTTATCTGGGGATAGAGTC 1950 29 100.0 31 ............................. AGCGGAATCAAAATTGCAGCAGCAGCTACAG 1890 29 100.0 31 ............................. GCTGATCCTGCTTTAGTTGATCCTAATGATC 1830 29 96.6 31 ............................A ATCATTTGAACGCCTGGATTCTTTGCATAGA 1770 29 96.6 31 ............................A GTATTAGCACAGCAACCAACAATATGAAATC 1710 29 96.6 31 ............................A CGTAATGGTAAATCTCAATTTATGGTGAAAA 1650 29 100.0 31 ............................. CGGAAATGTTTGGATTTGCTTTCAACTGCTG 1590 29 100.0 31 ............................. CGTTTTCTTCATCGGTATAGGAAGCTGCTTT 1530 29 96.6 31 ............................C TATATCTGACCAAGTATATGAAGTACTTAAG 1470 29 100.0 31 ............................. TTAAAAGTCAAAGCAAACTCTTGAAAAAGTT 1410 29 96.6 31 ............................A GCAAAGACAGGCTTAGAAGTCACCTGATATT 1350 29 100.0 31 ............................. TTACTTAGCAGCCCAAATTTATTCTAACAAC 1290 29 96.6 31 ............................A TAATTACTTTAAGCAACAACCACAAGGCTTT 1230 29 100.0 31 ............................. ATGCAAATTTTAAATAGTTAAATTGCGAAAC 1170 29 100.0 31 ............................. ATTAAATCAGGCTGTCAAAATGGCGCGACTT 1110 29 100.0 31 ............................. TGATCTGAATATACGGTGCATAAGACGAATC 1050 29 96.6 31 ............................A GTCATCTGGTAAAGAAATTACGTATTCGAAC 990 29 100.0 31 ............................. TGATCTGAATATACGGTGCATAAGACGAATC 930 29 100.0 31 ............................. TAAGGGGTCAAACTATGAAATTAACCGATGA 870 29 100.0 31 ............................. CCGACTGATCCGCCTGACCAACCGCCTCCGA 810 29 96.6 31 ............................A TGTGCGATCATTAGCATTAGGTGCAGATTCT 750 29 96.6 31 ............................A CCATGTGAACATGCATGCATTGATGCAATAT 690 29 100.0 31 ............................. TTTTAGGCATGTGTGGCGGTGATAAAGCAAT 630 29 100.0 31 ............................. TGCACTAAACGCTTAGTTACAGACCAACCTT 570 29 100.0 31 ............................. GAGCCGTCAGTCGGTTTAAAATCAACAGCTT 510 29 100.0 31 ............................. AACTCTATTGTTGTTATCCCGACATCTATTA 450 29 100.0 31 ............................. CTATTTTTCCATTCGGCACATGCTTTTTTTA 390 29 96.6 31 ............................A TGACGCTGTTGCAGCTAAAGTCATTTCCAAT 330 29 96.6 32 ............................A ATTACCCCAATTACTGCTACAGCACCCCCAAT 269 29 96.6 31 ............................A AGTCTCGGTAAACGTAGAGATAGAGATACGC 209 29 100.0 31 ............................. GTTAGGAGCCAAAAACTCACTTAAGATAGCC 149 29 96.6 31 ............................A TAGTCGCTTGCGGTACGATCTTAGCTGCACC 89 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 67 29 98.3 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AAATCAGTTTTAAGGGGCTTTGTTGCACAAACCTATCTCTAAAGGCTTATTCCACAATATA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.71, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //