Array 1 10955-11442 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVMP01000015.1 Akkermansia sp. BIOML-A54 scaffold15_size62276, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 10955 31 100.0 35 ............................... CCCCTCAAATAACACTCCTCATGCAACCTACGCTG 11021 31 100.0 34 ............................... CCAAACTTGTCCCTGTCCACCATGAAATCCCCTA 11086 31 100.0 34 ............................... CTGCCGCCTTTGACTACATGGACGGCGTGGGCGT 11151 31 100.0 33 ............................... AATGGCTATCAGGAGGCAGCTCCGGAACACCCA 11215 31 100.0 35 ............................... CCCGCGACCTTGCCGAGGGGGAAACCTCCCCAGTG 11281 31 100.0 34 ............................... GATTTCACAGAAGAGGACAGAGCGGAAGCCAGAA 11346 31 100.0 34 ............................... AGCAAAATCTGGAAAACGGAACATCCAGCCTTTT 11411 31 83.9 0 ....................CT...G...GT | G [11430] ========== ====== ====== ====== =============================== =================================== ================== 8 31 98.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCGCCTTTTTCCATTTCACAGGCTTTCCGCTCCAAGAGCGGAAAGCCTTTTTTATGCCGGAATACCGCCATATACGGTAGTGATCCGTACCCAACGAGTTGTAAATTGCCCGGAAAACGGATGCGGCAGTACGCCACGTAATAATGGGAAGAGACGTTTTCCGGCACCTCCTTTCCAACCCGTCTCCATGGTGCAGGTGGGAAAGTTTCTGGACGAAATGCGCGGGACGGACTACTATTACTCCTGCATCGCGGCAGGCACGGGCCGTCAGGTGGCCGGAACGACTCCTTGGCGGGATCTTTTTCTGCCCTTCGCACTCCCCGCGCCAACCCCCAGCTCACAGGAAAATCCCAGAACACCGGCGATTCCTGTAACTCGCAGGGTATCTTAGATTGACATCCCCCATATACTATTTCAGGCGTGGAATATGCATCTCCGCGGGCAGGTTGGCGCAAAATATCCTTTTCGTGCCTGACCCTTAACATATATATTCCCCCGCC # Right flank : TTTATCAGGAGCAGATGGTCCGATGCGTTCTTCTGATGATTCCTTTTGCCTGAAAGGCTTTTCGATGACGTTCAGACCATGAAAAAGCGCCGGACCCCGGGAAGGGGGCCGACGCTTGCGGTATAGGAGGGGGGAATTAATGGGAGCAGCTGGCGCAGGCCCAGCCTTCGCGGATTTTGGCAAAGAAGTCGTTGCCTTTGTCGTCCACCAGGATGAAAGCGGGGAAGTCTTCCACTTCAATTTTCCAGATGGCTTCCATGCCCAGTTCCGGGTATTCCAGCAGTTCTACCTTTTTGATGTTGTTCTTGGCAAGAATAGCGGCGGGGCCGCCGATGGAACCCAGGTAGAAGCCGCCGTGCTTGTGGCAGGCGTCCGTCACCTGTTGGCTGCGGTTGCCCTTGGCGATCATGATCATGGAGCCGCCGTTTTCCTGGAACAGGTCCACATAGGAATCCATGCGTCCCGCGGTGGTAGGCCCGAAGGAGCCGGAGGGATAGCCT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24465-25209 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVMP01000021.1 Akkermansia sp. BIOML-A54 scaffold21_size63908, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 24465 31 100.0 34 ............................... GCCAACCTCTTCTATCAAAGCCAAACCCCGGTAA 24530 31 100.0 35 ............................... AGGATTTGGAACTTACCGTTTCACCGTGGGCCGAA 24596 31 100.0 34 ............................... TATGAGTGCGAAAAGTGCCACTCGATCACCGCAA 24661 31 100.0 33 ............................... CCGGCTGACGTTGCGGCGATGCGAGAGGCACCC 24725 31 100.0 34 ............................... TACAGTCCGCAAGTTGTTCTTCAGGCGCGTTACA 24790 31 100.0 34 ............................... CCGGCGAGGATCACCTGGTGGAATTCGTATTGGA 24855 31 100.0 35 ............................... CAATTTCTCCAATCAGGCCGCGGCATCCGTGCAGC 24921 31 100.0 34 ............................... TTTCCGCATCCCATTCGATTTTAACGTGTTATAA 24986 31 100.0 32 ............................... TCCGGGTTGGCGTTGTAGGTGTCGTCTATCAC 25049 31 100.0 35 ............................... TACCTGTCCCGCACTTTTTGGATTAACACGGCCGT 25115 31 100.0 34 ............................... ATTTTATGCTCATCCGTCCATCCCCTGCGCCTCA 25180 30 77.4 0 ...................A.-...CAT.TG | ========== ====== ====== ====== =============================== =================================== ================== 12 31 98.1 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : TGATGGCCTGCCTGGCGTCCGCCGTTTCGCTCTTCCTTGTCTGGCTGCTGAACCTCAACAGGTGGACGCGCAAGAGCATCATGTAAAAGATCCGGATATTTGTTTGCACGGACGCTGCGGAACGAGTGAAACTGTTCCGCAGCGTTTTTTGTTCGGAAAGGCTTTTTTCTGTGGTGGACAGCAAAGGCTGCGGTGTGGTTTGAGGAAAGTTGCTGGACGAATCGTCGTGGTCATTTTATTATAAATACGCATCACGTGCAGGCACCGGTTATCCGGATGAGGCATCTCTTTTGAAGAGAAGAGCCGGCATCCGTGGTTCCCGGGCCAACCCCAAGCACACAGAAAATTCCCGGAAAGTCGGCGCTTTTTGTAACCTGTTGGGGATGTTAGATTGACAGTAATGATCATTTTTTAAGGCGTGGGTGCTTGCAGATTGGTATGGCAGGTTGGCGCAAATCATTATTTGTGCAATTAATGATCAATTTGTAAGCTCCCCCGCC # Right flank : GGATTGTTCATAATTCGAGCAGAATGCTTTTTCATATACACTGTAGAATGCAGGAGCAACGGTTATGCTTCAACATTTCACGATGCTAAAAAGCCGCCAGATTTTTTCTGGCGGCTTTTTTGTGTCGGTTAAGACAGGTGGGACAGGCCCGGATGATCTAAGGCCGGTTAGTCTTCCATGTTATCCCCTTATGGATCATGATTTCCCGTCAGCCATTCCACAGGTATTCCTGATATTTTTATCAGGCTTCCTGCCTTCGGCAGCTGTTTGTATGAGATAGTTTGCCCTGTGAAGACAAGGGGTTATCCCGTTATTGCTTCCATCTTTTGAGGTGCGGGAAGAATTGCTTCATGCCGGACCGGGCTTCTTCCACGGTATATTTCTTTTCCGAGTCCTTGTTGAATTCATCAAGGTATTCCAGGTTGTGCTCGATCATTTCATCCATGGTGCAGTCCCGGGTGAAACGGCCCTCTGCATAGCAGTAGTGGCAGTAGTCCTCG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 141721-140487 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVMP01000002.1 Akkermansia sp. BIOML-A54 scaffold2_size526399, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================================================== ================== 141720 31 100.0 34 ............................... TCAAGGCAGCCGATGTGATTGACGCGGCAATCGA 141655 31 100.0 33 ............................... TTTGCGTTGCGCAAAACTCCATGATACCATCCG 141591 31 100.0 34 ............................... GCCTCCACAGAAGCGGCCCACTTCTTGGCGAGTT 141526 31 100.0 34 ............................... TGAGCCTCCGCACTACGGGCGGCAAACTCACTCA 141461 31 100.0 33 ............................... TTCACTCATAATCAATTAACCTGAATCAAACTG 141397 31 100.0 34 ............................... CTGATGGACGCCGTGTTTCCGGGGTGATGAACAA 141332 31 100.0 33 ............................... AAGCAATCACACTTTTCGCACACATGCAATAAA 141268 31 100.0 35 ............................... TCTGTACCTCATACCCGCGATAAGAATGAGACTGA 141202 31 100.0 34 ............................... CTACCTCTCTAACCTCTCCTTTTATTGAAGAGAA 141137 31 100.0 34 ............................... CTCTCTCATTTCCTCTCTCATTTTTGCCCCTGAT 141072 31 100.0 34 ............................... AGGGCCGCCTCCGCGCCATCAGCAAAAGCTCCGG 141007 31 100.0 34 ............................... ATCTCCGACCAAGTCCGGTCCTTGATAGGTGCCT 140942 31 100.0 34 ............................... AGCTTCCCGTACTCCCGGCTCAACTGCCGCTGCA 140877 31 100.0 69 ............................... TCCGATTGGGGAAGACGGGTGCGTGGATTGAAACCGCGGGGAGGTTGGCAAATTCGGCGTCGGTCATAA 140777 31 96.8 34 ............C.................. TATGCTTGCTATCTTTCCCCCTAATTCCCTGTAA 140712 31 96.8 33 ............C.................. ACGCGCCAGCTGCACAACAATCAGGGCGGCCGG 140648 31 96.8 35 ............C.................. GGTCAATGGAGTTGAGGGTACCCGTGATGGTTTCC 140582 31 96.8 34 ............C.................. TATGTCAGGGCGCCACGTTTGATATTGCTACTAC 140517 31 87.1 0 ............C.A...T........C... | ========== ====== ====== ====== =============================== ===================================================================== ================== 19 31 98.6 36 GTCGCACCCTCATGGGTGCGTGGATTGAAAC # Left flank : GACGGGGCCGCCCTTAAGGGCGGCCCCGTTTCATGTTGGCGGAAAAGAAACTAACAAATGGGCGGGAATGAAAATGGAGGCCGGAAAAAAAGCGGAACTCACCCTTGAAAACTCTGTGGACAAATGCCGGGACTGTCCTGGAAAAATGAACCGGGAATACGGATGAAAGACAAGCCGGGAATGACGGTGGTGTTCGAAGAAGCTTCTGGACGTTCCCCCAGGGAATGGCTAGCATGTCGGCATACCACCTGACTGTGCACAAAGCGGTCATGGCAGGAACATGAAACAATTCGTGCATGTCCTTTCTGCTGCGGCCCCCTTGCGCCAACCCCAAGCTCACAGAAAATCGCCGGGAAACTGGCGCACTCTGTACGTCATTGAGGCTTGAAGATTGACAAACGAACCACTCATCATTACGACCTGCAAAGCGCAGGATGATTGAACAGGTTGGCGCAAAACGCCATTTGGACCTCTGACCTTCAATCCCTGCGCTTCAGGCC # Right flank : GCGGGGACGCTGTTATATGTTGCATACTTGCAGTTTGTGATGGACAGGAAGGAGGAAAAAGAGTGATATGAGTACGGTATGCAAAAGGATTGGTTGAAAGATCTTTTGGAGTGGAGTCCCCTCTTTCTGGTACTTCTGGCAGGGGGAGCGCTGTGGCTGTATTCCAAGTGGCAGCTCAGGAAGGTGGACAGATCGTTGAAGGAGTTATGGGGGAGCATTATCCGGAAGGCGGAGTCGGGCGATGCGTATTCCCAGTTTCAGGCGGGACGCATGTATCAGAAGGGAAATGGCGTTTCCAGAGATGCCGTATTGGCGGATGAGTGGTTTCACAAGGCGCTTCCCGGATTGAATCGGGAGGCCAATGCCGGAGACAGGGACGCCGCCTTTTGCCTGTACGAGTGTTTCAGAGAAGGACTGGCTGTACAGAAAGATGATGCCAAGGCTCTGCTCTGGCTTCAGCGCGCCGCGGAGCAGGAGGAGCCGGAGGCCATGTTTGCGCT # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCATGGGTGCGTGGATTGAAAC # Alternate repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 125652-127762 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVMP01000003.1 Akkermansia sp. BIOML-A54 scaffold3_size322755, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 125652 31 100.0 34 ............................... CACCAAAACACCACACCGACTAATACCCCTCGAC 125717 31 100.0 34 ............................... ACTTGATAGACGCCGTGAATTCGTCCTAGACACG 125782 31 100.0 35 ............................... GCGTAAAATTCAAACACCTGGATAACACGCTGATA 125848 31 100.0 34 ............................... GGGAACGCCAAGGTTCGCGGGGACGCCGAGGTCT 125913 31 100.0 33 ............................... ATACCACACGTTGTTGGGATCATCCTCAAAGCT 125977 31 100.0 34 ............................... TGCGTGCATACCGTAACGCAGGGGGCGTCCAGCG 126042 31 100.0 34 ............................... CGTTTCCAGCACGGGCGGGAATCGCGCGTTGGGA 126107 31 100.0 34 ............................... TCCGAATACCTCCGGGGCGCCAAACATGTAAGTT 126172 31 100.0 34 ............................... TCATTTGCAGGGGTCCATCCTTCCTTCCCGGATG 126237 31 100.0 34 ............................... TGGTTCGAACTTCCGCATGATAGCACCTTTCTGA 126302 31 100.0 34 ............................... CCACCTTACGCCTGCGGATGTTCACTACCGGAGA 126367 31 100.0 34 ............................... AGCTGTGCTACATAGCCCTGTTGTTTCTTCGTCG 126432 31 100.0 34 ............................... GTTCCTGTCATAGACAAGGAGGCTATCTACGCCA 126497 31 100.0 34 ............................... CGGCATCATTTGGAGTCATGATCTGACCTTGCCA 126562 31 100.0 33 ............................... TCTTGAACAGGCATTACTGTCTCAGGCTGAGCA 126626 31 100.0 34 ............................... TATGAAGCCTGGGATGAGTGGGCTAAGGAGTGGA 126691 31 100.0 33 ............................... CGCCGCCCGGAGGCGGCGGAAAAACCGCATCAG 126755 31 100.0 35 ............................... CAGGAGTTTTTCCTGGGCTTCCCTTCCGGCCAGGG 126821 31 100.0 35 ............................... AGAATTCGAAGCGGAAGTCCGATAATACTGCAAGA 126887 31 100.0 33 ............................... CATGTCCAGCAGCAGGAGGCGAATGACGCCGCC 126951 31 100.0 35 ............................... TGGATGCGGGAAGTCGTATTGGAAAAGCGCTCTCC 127017 31 100.0 34 ............................... ATCATGATGGATGGTAAGCAAGGCAAGGAATCCT 127082 31 100.0 35 ............................... GAGCCGCAAAGCGAGGACGGGCGTTTTAAAACGGA 127148 31 100.0 34 ............................... CCAATCTGTGCGGTCGGAAGTTGGAATTTTATTT 127213 31 100.0 34 ............................... ATTTTCATTTTTCAATTTGAGAATGGAGAGGTGA 127278 31 96.8 34 .............A................. TTTACGGCGGTGGAGTTTACCGGGTTGAAGAAGT 127343 31 96.8 34 .............A................. TTCCGGGCCTCTTCCGTTTGCTGCCCGCGCTGCG 127408 31 96.8 34 .............A................. GTATTGGGTAGAGAGCAAGATGGTGAAGGGAGGG 127473 31 96.8 34 .............A................. AACGGAAGTTTCTGGAGAAGGCGCATGGCCGCAA 127538 31 96.8 33 .............A................. GTTTAAATTATCCATATGATTTAATTCTATGAT 127602 31 100.0 33 ............................... GGCGAGAGAGTTCGAGCGTAGCGGCCAGAAAGA 127666 31 90.3 34 ....................C.A.......G TCAAAAAAGGGATCCAGGATCAAAAAGCTGGACA 127731 31 71.0 0 ......T...........TA.TT..AT..CA | A [127747] ========== ====== ====== ====== =============================== =================================== ================== 33 31 98.3 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GAAAACGATCCTTCCCTCAAAGACACGGTGACCATCCGCCACCGCGACTCCATGGAACAAGAACGCGTCGCCGTTAAGGACCTGTTGCACTGGCTCATTGCCCGTGTGCGGTAATATGTTCCTTAGCGGAATTAAATATTGTAAATACTCCAAGGCCGTTCCGCTCATGGCGGAACGGCCTTCTGTTTTCCAGAACTTGTAATGAAAGGAAAAGTTGCTGGACGGCGCATGAATGAATGTCTAGCATTCAGGAGATGCAGGTTGTACAGGCAGGCGGAAAACAATGATCTCAACACTTGTTGAAAATCTGCTGTTCTGTTTGCGCCAACCCCAAGCTCACAGGAATTCCCCGGAAGTTCGGCGATTGCTGTAAGTCATTGGAAAACGAAGTTTGACATATCCAATTACAAAATTTAAGTCGTGCGGAATATCGTGATGGAGAGAAGTTGGCGCAAAAAGCCTTCTGCGCTGTTCTCTCTTAATGGATATTTCCTCACGCT # Right flank : AAGACAGAAAGAATCTAAAATGCTATTAAAACAATGAGTCCCCTCAATAGAATTTTCTAAAAACGGAAGTGTTTAGTAAAAAGTATTGAATTGTTCTGGAAAGAGTGGGTGACTCATTTACCATATCATAGTATGAAGAAATAAATATTGCCCCAATTTTATTTAGAGGGGTTAGTTTACAAGGGAAAGGTAAAGTCTAAATTATAAGTAAATTCAAAGCCCGGCCTATTTTCAATGAAAATAGGCCGGACAGGAGAGATTAAAATCCATCAATTTCTTCTGGGGTCAATCCCTGAAGTTCTTTCAATTCATAGGTACCATCATTATTGACAATGAGGCTTCTATGGACTTTTCCAGAAGAATATTGACCTGCAGGGCAGGAATGTTTCCACCAGATCACTTTCTTCACTTCCATGCTTCCTTCAGGCCGGGAGGAAGAGGCATCCCCTTCAAACATAAAAGGAAGAGTATTTTTTAATAATTCTGCATCTTCATCACTA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 136273-137241 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVMP01000003.1 Akkermansia sp. BIOML-A54 scaffold3_size322755, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 136273 33 100.0 33 ................................. CGGAATCCGTTGCGACGCTGAAGGGGCCATGGC 136339 33 100.0 33 ................................. CCCCGGCAAAAGGAGGGGACGAAAAGACCTGGA 136405 33 100.0 35 ................................. GCGTTGAAGAAATACAGGTACTTGTGCTGAAGAAG 136473 33 100.0 35 ................................. CGGGTGTACTATCTCGCGCCTGACCTTAAAATTGA 136541 33 100.0 33 ................................. TTGCAGGAAGTTATTCCTGGTACTCCTGATGCT 136607 33 100.0 34 ................................. AGGCTGCTGCTGTTACGGAAGCAAAGGCGGCGCG 136674 33 100.0 33 ................................. CTGACGAACTCATTGAAGATATTGTACACCTGG 136740 33 100.0 34 ................................. CGGCAATTTTGTGTCAACTGACGTGCCGTTCAAA 136807 33 100.0 35 ................................. AAGACGTGGAGTAGCGTACTTGATAAATTCCGAAA 136875 33 100.0 33 ................................. ATGAAGCAGGAAATTGCAGTACAGGCACCATCC 136941 33 100.0 34 ................................. GTATGAATCTCCCACGCACTCTTCTGTTCCGTCT 137008 33 100.0 33 ................................. CGTGAAGGTGGAAGTGATTGACGGCGCAGGAGA 137074 33 100.0 33 ................................. ATAGGCTAGAGAGCGGACCGGCGTGCGGATGGG 137140 33 100.0 34 ................................. GAGAGGGAGGCGGATGAGGTGTCTGCGGAGAGCG 137207 33 81.8 0 ...................C....AC...T.CG | GC [137229] ========== ====== ====== ====== ================================= =================================== ================== 15 33 98.8 34 GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Left flank : TTTCTCTCCATGTATATTCTCATCACCTACGATGTTGTTACGGAAGACAAGGCCGGCCAGCGCCGCCTGAGGCGGGTTGCCCGTGCTTGTGAAAACATCGGGCAGAGAGTACAGAATTCCGTGTTTGAATGCGAGGTTTCTCCGGCCCAATTGGTTGAAATCAGGAGCAAGTTGCTTAAAATTATTGATCAGGACAGTGACAGCCTCCGGATTTACCACATGGGGTCCAATTGGCATCATAAAATCGAACAATTAGGCAAGGAAAAGAGCTATGACATTTCCGGGCCGTTGATCATTTGAGTGCTGTTTGACATGGCCTTTGCGCCAACCCCAAGCTTACATCAAATTGCCGGGAAGTCGGCGATTCTTGTAAGACATTGGAAAACGCAGATTGACAACCAAGTATGATGAAGAGAAGACGGTATGTGATGTACCGTCTTCGTGAAGTTGGCGCAAAGCCCCGCTTGCATGATTGATTAACAACATGTACCGTTGGGGCA # Right flank : GATGATTAAAAAGCACCCCGGACCAGATAAGTCCGGGGTGCTTTTTTGTTTTCTGCCGAAGGAGTCAGGGAATGGGTCGATCTTTCGGGTTGAGTTCGGCGGGCGGCAGGGAACGGAGCAGGGCCAGCAGGGGGTCCTGCACTGCGGTTCCTGTTTCACTCTGGCGTTTGAATTCCTCTTCTTCCTGCTGGAGGGCGGCCAGTTTGGTGTCTTCCACCAGGGCTTTGAATTTGTCTGCCTGGGAGTATTCTCCGTCCGTATCCCGGAAGACACGGGCAAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGATCGTTCATGAGTCCGGCTGTGTTTGTTTGTCCAGCAGGTTTCCGGCCAGTTGCCTGCCTCTCTCCGTAGAGCGGTAGACATAGGGACGGCAGTCCCCGAAGCGCTCCACGTAACCCTGCGCGATGAGGTCCTGCAAAATGTTTGTAACGGTGTTGGGGTGCAGCCGCGTCGCTTCCGTGATGGTGC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 71753-72255 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVMP01000012.1 Akkermansia sp. BIOML-A54 scaffold12_size98863, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 71753 33 100.0 33 ................................. CAGAGAAGTTTAAGAATCTCGGAGAGATAGGCG 71819 33 100.0 34 ................................. GCCTACTACAACCAGCTTAATGGCGAATACATGT 71886 33 100.0 34 ................................. CTGATGGTACGGCCAATCCATCTTTGGTAGGCGA 71953 33 100.0 34 ................................. TTGATATTGTACCGGTATCCCGGCATCATGGACA 72020 33 100.0 35 ................................. TGTGCTGGGGTCGATGATCCATTTTTGGCTGTCGG 72088 33 100.0 35 ................................. GTCCAATGCGACCAGATTTTCGACCACGTCCACTA 72156 33 100.0 34 ................................. CACCAGTAATCAAAAATCTTGATGTCCCATGACT 72223 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 8 33 100.0 34 GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Left flank : GCTGCCCACAAAATCCCGGGTCAAGACCCTCCAGTACCGTTCCGGCATCACGGCCTACTACATCCTGACCATCCATCCGGACTCCATGACGCTGGACACCTACGCCGCCCCCAACAACGGCACCACGGACAAGGGTCCGCAAAGCGACGAATTCAAGAAACTCCCTTCCTACCGGATCCCGATGGATTAAAGGAAAGAACATTCCTTCCCTGTTCACCGGAAAGGAAACTGGACGCGCTTGAGCTTTCCGGATAAACTCCCTTCCACCTTGGAATGCCAGGGCAGAAAGAAGGAACATGCCCGCCTCCCTTCTGCCGGACAGCGCCAACCTCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTGCTACAAGTTATTGAGGACTGCATATTGACATCATGGAAACAATAAACGGCGGGTTGGAAATATCCCTCTGATAAACAGGTTGGCGCAAAACATCCTCTGCCCACCTGAACATCAGCCGGATACCTCCCCTGCC # Right flank : CCGGGCTGACGCATGACCGGAGCAACAAGGCTTTTGTCGCACCTCACATGAGGTGCGACTAAACCGTTTGGGCAAGCGTTGGAATATCCATCAGAGCGGACAGCAGAAAGAAGAAAACCGCATTTCCCTGACGTGATTATGTTCGCGATGATTTCTGCACAAAGATTCCGTCCAAGTATTCCGCCTTGCTATCCAGTCCATTCAACCGTTTGTTTCCTCATGGCCGAATTCCGGCTGAAGGTTTTGTTCTTCCACGGCCTACCTGTTTCCCGCCAAAAAGCAATCACCGTTTCCATAAAGTCTTTTTTCCTGCCGGATGTAAATCCGCTTTTCCTTGCCTCTCCACCAGCCTCTCAATTTGACTTTTTCCGCATCCGCGCTTCCCCCAACGGGATATTTTCCATTCAGCTTCCGTATTTCATTTTTTCTTTTCCTCCCAGTTTCAGGCCGTTTCCATCCGGGCGGCCCGCACATTTCCACGCTCCACAACCCGTACCTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //