Array 1 43459-44707 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTQA01000011.1 Escherichia coli strain SWECR0161 contig000011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43459 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 43520 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 43581 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 43642 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 43703 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 43764 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 43825 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 43886 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 43947 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 44008 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 44069 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 44130 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 44191 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 44252 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 44313 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 44374 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 44435 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 44496 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 44557 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 44618 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 44679 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70407-72265 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTQA01000011.1 Escherichia coli strain SWECR0161 contig000011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 70407 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 70468 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 70529 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 70590 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 70651 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 70712 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 70773 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 70834 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 70895 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 70956 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 71017 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 71078 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 71139 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 71200 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 71261 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 71322 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 71383 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 71444 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 71505 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 71566 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 71627 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 71688 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 71749 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 71810 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 71871 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 71932 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 71993 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 72054 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 72115 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 72176 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 72237 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //