Array 1 150899-149894 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHIP01000031.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N46842 N46842_contig_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 150898 27 93.1 32 --........................... AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 150839 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 150778 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 150717 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 150656 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 150595 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 150533 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 150471 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 150410 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 150349 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 150288 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 150227 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 150166 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 150105 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 150044 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 149983 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 149922 29 93.1 0 ...........................AC | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1246-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHIP01000072.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N46842 N46842_contig_73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1245 27 93.1 32 --........................... GCGACATCAAAATCTATTTTTCATTCTATCTG 1186 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 1125 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 1064 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 1003 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 942 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 881 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 820 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 759 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 698 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 637 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 576 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 515 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 454 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 393 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 332 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 271 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 210 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 149 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 88 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : C # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 272-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHIP01000073.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N46842 N46842_contig_74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 271 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 210 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 149 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 88 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGTCATTTCTGGACGGGGCTGTGTGACGAATAC # Right flank : C # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 209-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHIP01000078.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N46842 N46842_contig_79, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 208 27 93.1 32 --........................... ACGGCATTATCACGGCTATTTCTCTGGAAATG 149 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 88 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : C # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //