Array 1 1274-168 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUU01000021.1 Bifidobacterium pseudolongum subsp. globosum strain 2009B Contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1273 33 100.0 33 ................................. ATGCACCAGATACCTGTCCTCCAACATGCCCAA 1207 33 100.0 34 ................................. CCGAACCTCGTGCGCGAACTACGAAGGGCGGCGA 1140 33 100.0 35 ................................. GACGGTCAGGCCGGTGAGCAATGCGGGCGACCAGC 1072 33 100.0 34 ................................. CTCAACTGCTCCGCATGGGATTCGCAGACCACCA 1005 33 100.0 34 ................................. TTGGTCAATGTCGGTCAATACGCGCGTGACAAAC 938 33 100.0 34 ................................. GTATCCTCGCTGACGAGCGCCGCGACGTGTTGGA 871 33 100.0 34 ................................. GTCTGCCGAATGGTGGGCGTATCGACCCGGTGAC 804 33 100.0 34 ................................. CCGTTTCGGGTGCTGTTTCGATTGGGACCAGTTC 737 33 100.0 34 ................................. AGTAACATGGCAGCCGTTCGCGCGAAGATGGCGC 670 33 100.0 34 ................................. TGCCCAGTCGGTATAACATGCTCGCTCACCTTGA 603 33 100.0 34 ................................. CATCAATATCGAATACAAGCGTAATCGCACGTGG 536 33 100.0 35 ................................. GTCAGGGTTGATGGATGTTTTGCCGAGGTTACAGT 468 33 100.0 35 ................................. ATACAGTCTGGGCGGGTGGGGTTCACAGCCAAAGC 400 33 100.0 34 ................................. TTGAACGCTGCTTGCCGTGGCGATGGGGCGAAAC 333 33 100.0 33 ................................. ATTCCGACCAAGGCCGAACAGTTCGCCGTGAGG 267 33 100.0 34 ................................. TACGAAAACTGCCTGAGCGGTGCGGAACTGTACT 200 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 17 33 100.0 34 GTCATCTCCCTTCGGGGAGGTGTGGATTGAAAT # Left flank : ACGTCGCCAAGACATGCATGCGATTCGGGCAACGGGTTCAGAATAGTGTATTCGAATGCTCGATTGTGCCAGCTGACTACTTGATGCTGGTTTCAGATTTGCTGGAGATCATCGATAGAGAGAAAGATAATCTGCGCATCTACAAACTTGGCAAGAATTATGCAAGTAAGATTGAGAGTTATGGGCGCAATCTGCATATGCCATTCGATGACGTCATGATGATTTAAGCATAGACACTTATGGTTGAGGGGGCGTAGTGGTGCGAAGGGGATGCTGTCATGTTTTCTCCGTAGGCTCGCACTGAAAGCGCTAGATCTATACCAGAGATTTCAACCGTATTGAGCGGATGTTGTTTGATAATTCAATAGTGTTTTCCACAATCCGGATTCAGTTCTGAGATATAGTAGTTAAGCATCATTCAGTATGAGTTTTCTGCGATAGAATTCAGACTGAACGTGAGCAAAGTGTCTGGAATATGGATCATTTTGTTCATTTTTGAG # Right flank : TCACGGACACCTCAAGATCATACAGCCGGTTGATCGTCATCCCCGTTGTCTAAATGAAAGTGCAACACCCGGTAGATTGGTAATTGTCCAGAAAACCAGTCCGGAAGGATGTTGCACCTATGGGAGCAGTATATTCGCACCTGTCGGAAGAGGAACGCCAGATCATCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCTCCCTTCGGGGAGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA // Array 1 640-6426 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUU01000033.1 Bifidobacterium pseudolongum subsp. globosum strain 2009B Contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 640 33 93.9 33 .GG.............................. AAGAACACGATGAAGTTCGCCGGCATCGACTCG 706 33 100.0 34 ................................. TCAGTAGTCTCACTCTCCATGTTGTTCCACTCGC 773 33 100.0 33 ................................. AAGAAAGGAGAAGAAAACTTCAAGAAAGAAGGA 839 33 100.0 35 ................................. AACAGCGCCGCCACATCAACTGAAGTGGAACACTC 907 33 100.0 35 ................................. AAGTCCCGCTACCAGTGGGGTGCGATCCTCTCCAA 975 33 100.0 33 ................................. ATATCAGAAAGGAGCAGTGAATGGTCGTCATAC 1041 33 100.0 36 ................................. AAGCTGTGTAACGTTACGTGGGACATGGGATACCGT 1110 33 100.0 34 ................................. TGGACTGGCGAGGGCACTGCGGAAAGTCTTGTAT 1177 33 100.0 34 ................................. TTCCGTCCATAGTGTCATGAACCTATCAACCCTC 1244 33 100.0 34 ................................. CTTTGCTAGAGTTGCCGCCTCCATTGGCGGCAGA 1311 33 100.0 33 ................................. AGGAATATTGTTGTTTTGTCACCGTCGTGCAAG 1377 33 100.0 34 ................................. TTTTTTGCATACGTTTCGTCTGCGGCAGTTTTTG 1444 33 100.0 33 ................................. TCCTTTTAGAAGGTGATGAGGTCGTGGTCCTGA 1510 33 100.0 33 ................................. CCAAGTCGGCGCCTTGGATTTTGGCGAGGGTGG 1576 33 100.0 35 ................................. AACACCGTCCACCCCGTGTCACCCTGGTCGGGCAC 1644 33 100.0 34 ................................. ATCAGGTGCGGCATGAGGTAGAGCGCTTTGGTGA 1711 33 100.0 33 ................................. TTCAACTTGCCGGCCAACACGTCGGGAACACGG 1777 33 100.0 33 ................................. ACCGGTGGCGTCCACCAGCTATTAGACCTTGGT 1843 33 100.0 36 ................................. CTCGACCTCAACTCGAAGTCCGGACCCGACCTCGAC 1912 33 100.0 32 ................................. CACGTGGTCGCCGGGGTTGAGATTCGCCACGC 1977 33 100.0 34 ................................. ATGACCTTGGGGAAGTTGTTCATCTGGTCCGCGC 2044 33 100.0 34 ................................. ATTCAACGGACGAACATTTTGGGCGATACGCCAT 2111 33 100.0 34 ................................. TAACCAAAACCGCGGAATGTTGCGCATAAGTCAA 2178 33 100.0 33 ................................. ATGGGCAACGTCGCCGCCAAGGGCGTCGAGAAA 2244 33 100.0 33 ................................. ATGCAATGGCTGTCCGACACATGGAACGGCGTG 2310 33 100.0 35 ................................. GCTCATGGTCCTGTGGAAACGCCTGCGCGCCGAAG 2378 33 100.0 34 ................................. CGGCTACGGCGATGTCGCCCTCAAAGACCTGCCC 2445 33 100.0 33 ................................. GCGTGGAGAAACGATAGCCGTCCTGTTATGCTT 2511 33 100.0 34 ................................. ACGGTCTGGATGGTGCCGCCCGTCACCGTTGCGC 2578 33 100.0 33 ................................. GAGTGCGGTCCATGGCACGCGCATGCCGCCGAG 2644 33 100.0 34 ................................. TTTCCACCATGCGAGCACTTCACGGTTTTCTTCG 2711 33 100.0 34 ................................. GGCGTCGACAAGATCAGCAACGCGATCAACAAGT 2778 33 100.0 34 ................................. TTGCCTTCGGGCCGGTCGTCGAAATCCAGATCGT 2845 33 100.0 34 ................................. TCGTCGACCATGCCTGAGCCGGCGGCGTCGGTAC 2912 33 100.0 34 ................................. AACTGTTGAGGGTAGGCAACACATAACAATATCG 2979 33 100.0 34 ................................. TGCATCCAGATGGAATTGGACTGTGTAGCGTTTG 3046 33 100.0 34 ................................. AAACGTGGCCTGCAGGCCATCGGCAGTGCTGCGG 3113 33 100.0 33 ................................. CTCCTCCGTTGAGGTACTGCTGTGTGAGATTTG 3179 33 100.0 35 ................................. CTCGAGGAAGGCCAAGCGACCGGTGACATGGAAGG 3247 33 100.0 34 ................................. AGGGTGAAGCCGCCGACCTCGCAGAACTGCGTCG 3314 33 100.0 34 ................................. ATGAAGCGCGATAGCATCGTGGTGAGCCATGCGC 3381 33 100.0 34 ................................. TACGAGCATGCCGAAGCCGAACTGGATACGTGGA 3448 33 100.0 35 ................................. AGCGAATTCGACCGTCAGCACACGGAATCGTTGGC 3516 33 100.0 34 ................................. AAAACCGCATGGCAGGCTGTTCAGGACCGGTTCA 3583 33 100.0 33 ................................. GATAAATGTGTGATTTTAGGCATGAACCGATAC 3649 33 100.0 35 ................................. AACGCCATGGCCTCGTAGTCGGTCTTCCATGGCGT 3717 33 100.0 34 ................................. TGGGGAGCCGAGCCGACGCATGAGTGTGGTGCGC 3784 33 100.0 35 ................................. GCCAAGAACGACAAGCCGCTCGAAGCCCTCATCGT 3852 33 100.0 34 ................................. AGAACACGTGCGCGCAGCTGGCCGCGAACGGCAT 3919 33 100.0 35 ................................. GCTTATGGCACGAGCGCGAGTGGCGCGAATTTCAG 3987 33 100.0 34 ................................. TGCGCCGTCTGCAGGCGGCGCTCCCCCATGATCC 4054 33 100.0 34 ................................. ACGAGTCTGCTTTCGTCGGCGCGGATCGCGCCCT 4121 33 100.0 34 ................................. TCCGTTGACCGTGTTATCGCCGAGCTTGGCCCGT 4188 33 97.0 34 ................................C CCCTTTTCTGTTGGATCCACTCGTAATGCATGTT 4255 33 100.0 34 ................................. TTGACGAGGAAAGCACAGCGGCCGAACTGCGCCG 4322 33 100.0 35 ................................. ACGATTGCGGAAGAGCGCGACATCGAACTGCGCAT 4390 33 100.0 33 ................................. CATGCCTCATATGTGCGGTCGTGGGCGCCTTGT 4456 33 100.0 35 ................................. CAAGTACCACATAATCACCTGATTATCCCGCGCCG 4524 33 97.0 34 ....C............................ GGTGTCGATAAGATCAGCAACGCGATCAACAAGT 4591 33 100.0 34 ................................. CTTCACGGTCGGCGTGGCGGGCTTGGACAGGGCG 4658 33 97.0 33 ....C............................ AACGCACTCCACCCCATGAACCCGACAAACAAC 4724 33 97.0 33 ....C............................ AATGTCATAATGACCTCCCTTTTTGGTTTTGGT 4790 33 97.0 33 ....C............................ AAACTGTGCAACGTCACTTGGGACATGGGGTAC 4856 33 97.0 35 ....C............................ GCTGATGATCGTGAGGTTCGGCACTGTATACAGCC 4924 33 97.0 34 ....C............................ TCCACGAACGTGCGCCCAGGATTGAGCACACCAC 4991 33 97.0 34 ....C............................ AACGTCTACGACACGGACGGTAATGTTACCGTCA 5058 33 97.0 34 ....C............................ AAGGAGGACTTCGGCCATATCATCACGTATCCAC 5125 33 97.0 34 ....C............................ CATGAACCCCTACCAGCCACTCGGCTACACGTAC 5192 33 97.0 33 ....C............................ TGCCACGACGAGGACGCCGTGCGCCATACGTTT 5258 33 100.0 34 ................................. ATCAAAAAACGCGCCATCTGCTCAGGGTCGTCCC 5325 33 97.0 35 ....C............................ AAACCCCTTATCACCGCAATGGAAATCATCAACAA 5393 33 97.0 33 ....C............................ ACCAACACGGAACGCCAATGCCTCAACGCATGG 5459 33 100.0 34 ................................. GATGTCGAACCGGTTTTCAACCAGCGTGCGTTGG 5526 33 97.0 33 ....C............................ TACCTACTCCAAGGGACCGTCAACACTCCCAGC 5592 33 97.0 33 ....C............................ AAAATGACCGACATGCTCGAAAACCGGCAGCTC 5658 33 97.0 33 ....C............................ GAATGCATCGAACTGGCCCAACACTACGACTTC 5724 33 97.0 33 ....C............................ TGGTTGGGGTTGAGGTTGTCGAGCATGGTTCGC 5790 33 97.0 35 ....C............................ CATGCCTGCCCGAGCCAGTCCATGAACGAGGCCCA 5858 33 97.0 32 ....C............................ TTTGGCGTAGACGGGGCTTGCGGTGGATTCCC 5923 33 97.0 34 ....C............................ ATTAATCGTGTCGCACGCCTGCTGCCTGCATTGC 5990 33 97.0 34 ....C............................ ATTTGGTCGTACCATGATCACTCCGTCTTGAACT 6057 33 97.0 34 ....C............................ TTTGGAGTTGAGTGCGGATGCTCCGCACCGTTTC 6124 33 97.0 36 ....C............................ TCGGAAACCGCTCGCTTGGTCATGCCTTTGTCGTGG 6193 33 97.0 35 ....C............................ TCGGCCGGTGCGGGGACGCATGGGGGCAGGTGACA 6261 33 97.0 32 ....C............................ ACCCTCCTGCACTGCCGCCTGTCCCCGTTCGG 6326 33 97.0 35 ....C............................ AGGCAACGCTCCCGCATCCACCTCGACAGTCACCA 6394 33 78.8 0 ....C..................ATT...TC.A | ========== ====== ====== ====== ================================= ==================================== ================== 87 33 98.8 34 GTCATCTCCCTTCGGGGAGGTGTGGATTGAAAT # Left flank : AGGGACGAGTTCGGGCACTGGGAGGCGGACAGTGTCATCGGGGTCGGGGCCAACCTGCACACTGAGGTCGAGAGGAAGACGAGGTTCCTCATGGCGCGCATCGTCCCGGACAAGACCGCCGATGAGAGCGTCGCCGCCCAGCTGGCGATGTTCTCCGCGCTGCCCGCAGGCGCCAGGCTCAGCGTCACGCACGACAATGGCGCCGAGTTCGCGCGTCACACGCGGCTGCGCGACGAATTGGGCATGGCCACGTACTTCGCCGACCCGTACTCCAGCTGGCAGCGGGGAAGCAACGAGAACCGCAATGGCATGATCCGCCGTTACCTGCCCAAACGCTGCACAATCGCGATGGGCATGGCACGGGAGGTGCAGGAGATTGTCGACGAGATCAACAACCGGCCCATGCGCGCGCTCGGATACCACACACCCGCTGAGGCCTTCGTCGACGAACTGGTAAACTTACAAGCCTGACAGGGGTGTTGCACTTTCATTTAGACAAC # Right flank : GTTGGGTTGTACGGCGTCGTCACTTTTTCTGGACGGTGTCGGCGCTTGTTTTGGACGGTGTCGTCGGTTTGGGGTTCCTTCGGTTTTGTTGGTTTGGTTATTTCATGAGTGAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCTCCCTTCGGGGAGGTGTGGATTGAAAT # Alternate repeat : GTCACCTCCCTTCGGGGAGGTGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //