Array 1 27355-25645 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUMP01000007.1 Pasteurella canis strain QBSD contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27354 28 100.0 32 ............................ TATTAAATGCTCTGCAGCTTTCTTATCTCTAG 27294 28 100.0 32 ............................ GTTTCGATAACGAAAAAATCACGTACTGACAC 27234 28 100.0 32 ............................ GCTTAAATTTCACTCGCTCGCACTAAAAAAAT 27174 28 100.0 32 ............................ TTTTATTGATAAATTTAAACAAAAATTCTCTT 27114 28 100.0 32 ............................ TTAAGTTTAATAACTAAAAAGAGGAAAATATT 27054 28 100.0 32 ............................ TTGTCCGCTTAAAGAGTTAGAAGAAGGTCAGA 26994 28 100.0 32 ............................ TTATCAAGGTGAACAAAAAGCAACACTGAGAT 26934 28 100.0 32 ............................ TCATTGCTATAGCTTATTAAAAAGAACCATTT 26874 28 100.0 32 ............................ TAGAATAACGCCGTAAACTGCATTATGTTCCT 26814 28 100.0 32 ............................ TTCACTTATCATGTCAACTGCTACTAACACTT 26754 28 100.0 32 ............................ ATCTAAACAACTTTGCTTAGCTTGATCTAATG 26694 28 100.0 32 ............................ GCCCGACTACATACTGAAATACGACTACAACA 26634 28 100.0 32 ............................ ACGCGCGATAGCGTTAAGCACTTCTGAGTACT 26574 28 100.0 32 ............................ TGATCCGAGTAAATATGTGCCAATTTCAATGA 26514 28 100.0 32 ............................ TCATTGAACGCATCAATAACGCCTTGATAATC 26454 28 100.0 32 ............................ TCGCTCTTTAAAAAACTGGATAAAAACGCATA 26394 28 100.0 32 ............................ AAACCCATAAAAAAATTGACATAAATGTCATT 26334 28 100.0 32 ............................ CATCACTCACAGCCGCGTGTTTGAAATCCCAT 26274 28 100.0 32 ............................ CAATTTCTTCTTTCTGTGCTAAAAATCGGTAC 26214 28 100.0 33 ............................ CTGACGGCTTTGGTGGATATGAGCCACGCTTTA 26153 28 100.0 32 ............................ GAATTTTTTCAGCAAAAAACCTTTAATTCTAC 26093 28 100.0 32 ............................ AAAATACGCAGTAGAATTGCAGTTGTTGGACG 26033 28 100.0 32 ............................ CAAAAGAACAGTTTTTCGATTAGTGTATAAAT 25973 28 100.0 32 ............................ GTAAGTAATGGCTTTTACAGCCCACATTTGAG 25913 28 100.0 33 ............................ ACCGTAGTGGGCTATTGCGACTTATTTTAATAA 25852 28 100.0 32 ............................ GTTTTGGATGGATAAAGGGGAATTAAACAAAA 25792 28 100.0 32 ............................ ATTCCCATCGGCCCCGACTGGAGTGTACGCTG 25732 28 100.0 32 ............................ CTCCTGCCCTGTAATATCAGGGCTATGAATAC 25672 28 82.1 0 ....................T.C.T.TC | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.4 32 GTTCAACATCGTATAGATGGCTTAGAAA # Left flank : CAGCTTTATCAACAATTATCACAAGTAGGATTGCAGGATTATGCGTTGATCAGTAGTGTAAATAAAACTCCTCCTGTAGCAGAATATCGTTGTTATAGTCGTGTGCATCGTAAAGGACAAAGTACGATTCGTCGTACAGAAAAGTTCCTGAAGAGTATTGACAAATGGCGTGAAGGGATTCGTGAAGAAATGCAACAACGCCAGCAAAATACACCTTATTTTCCACATGTACATTTAAAAAGTGCGAGCACAAATCAGCGTTTTATCTTGGCAATAAGAGTCAATAAAACCTCTCAGCCTCATATTGCTCAATTCAGTAGTTATGGATTAAGTAATAAAGCAACTGTGCCACACTTTTAACCTAATTTATAACCCTTTTTTCTAACTGGCTAAATTAACCAATGAGATCAAAGGGTTATAAATATGCTGTAAAAAAGGGTTTTTCTTTCAGATGCTCTTTAACAATTTGAAGAATAAATAAATTTTTATTAATATTCTTA # Right flank : TGCTTAAATAAAGCTTATTATTTAAACATATTGAAAAAGTTAAATGTTATTTAATTTAGTTTAAACTGGATTTTAATATTTTTACACTTAGTTAAGGAGGATGTTGTGCGTAAGACACCTTATATTGCCTCTTCAGATTTAAAAACCATAATGCATTCTAAAAGAGCCAATATTTATTATTTAGAACACTGCCGAGTATTGTTAAATGGTGGACGAGTGGAATATGTGACTGATGAAGGTAAAGAGTCTTTATACTGGAATATCCCTATTGCCAATACTAGTTGCCTGTTATTAGGGAGTGGAACGTCTATTACACAAGCTGCAATGCGTGAATTATCAAAAGCAGGGGTAATGGTGGGGTTTTGTAGTGGCGGTGGTACGCCTTTATTCAATGGAACAGAAGCAGAAATTGGCTGTGAGTTTTTTAGTCCACAAAGTGAATATCGTCCTGTTATCTATTTACAACAATGGTGTCGTTTTTGGTTTGATGATGAAAAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACATCGTATAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GTTCAACATCGTATAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 75220-72969 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUMP01000007.1 Pasteurella canis strain QBSD contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 75219 28 100.0 32 ............................ TTTTGTGTGTTCGTTAAAAATTACATCTATTC 75159 28 100.0 32 ............................ GAAGTGGAAGAATGGCTTCAGTCAGGTAATGT 75099 28 100.0 32 ............................ TTAAAAGTCAATTTATTTTTACTCATAAACTC 75039 28 100.0 32 ............................ TGTTGCCACATATAATTCTGAATCTGATATTG 74979 28 100.0 33 ............................ AGTTATGTTGAAAAATGGCTGTAAAGGCTTTAT 74918 28 100.0 32 ............................ ACACACCAGCTTTCACTGCTAAATCTAGGTTG 74858 28 100.0 32 ............................ ATATGTTTGTTTCATGATTTTTTCCTTTTTTA 74798 28 100.0 32 ............................ TCAAAATAAAAGTCCATTGATGTAATCAAAGC 74738 28 100.0 32 ............................ GCGCGAGAATTTACACATAATTTGCATTATGC 74678 28 100.0 32 ............................ GTTACAATGTGATAGTTCAAATCCGCCATTTT 74618 28 100.0 32 ............................ TGCACGTTCAATTAACTTCATTCAATTGAATT 74558 28 100.0 32 ............................ TAGCGCAGAAATAAATTCATTAGTGTCACCTG 74498 28 100.0 32 ............................ TGTTCTCATATTCTTTATTGGAATATTAGAAA 74438 28 100.0 32 ............................ CCACTTGTTATCTTCTGCAAAGTGATGCGCTT 74378 28 100.0 32 ............................ GATATTCCCAATCTTGGTGATATGACTGAATT 74318 28 100.0 32 ............................ TTGTCTATCGTTATGACGACCCGTTTTGGAAT 74258 28 100.0 32 ............................ GCCCCAGAAATTGATATTAAACGTATCTTGTG 74198 28 100.0 32 ............................ AAATAAACGATGTAATTTATTCATGTTCAAGC 74138 28 100.0 32 ............................ TCAAGGGCTAGTTTGTAGAGTGAGAAAGAAAG 74078 28 100.0 32 ............................ AAACAAAGCAATTAAACGTATTGGGTATAAAA 74018 28 100.0 32 ............................ ATTTGTCATCTTGCTCATTCCAGCCATTAAAA 73958 28 100.0 32 ............................ ACTTGCTTGTAGTGTTCGGCAAGTTTAGCGAT 73898 28 100.0 33 ............................ TCAATGTATCACCCGCCGTGATTACGAATTTAG 73837 28 100.0 33 ............................ TTCTGGCGTTGTGTTAAATAATTCTAATTGTAA 73776 28 100.0 32 ............................ CAAGTCAACGAGCGTTTGTTCGGCTTTATTTA 73716 28 100.0 32 ............................ AAGCCGCATGTGATTAAGCCCGTTTTTAAAAA 73656 28 100.0 32 ............................ AGAATTGCACGTCATCAAATGTGTTTTTTGCT 73596 28 100.0 32 ............................ ACAATTCACCGAACTTGATTTTTAATAATTCT 73536 28 100.0 32 ............................ ATTTACCAACACGCTCAATATAGACACCACCT 73476 28 100.0 32 ............................ TGAAAGATAAAAACGGTATGAATGGTGAATTG 73416 28 100.0 33 ............................ ATCGATCAGCTTTTTAATGCGCTAATGCTGGGT 73355 28 100.0 32 ............................ GTGTTGAGGGAATGAATGTATCAAGTGGTATG 73295 28 100.0 32 ............................ CAAGCCCTAAAATGTTGCTAGAACGTTTACCA 73235 28 100.0 32 ............................ GATGAACAGTGTCAGCAAGAAGATTTTTTCCC 73175 28 100.0 32 ............................ GTTGGTTTGGTCGCCAACGGGCTCATTATTTA 73115 28 100.0 32 ............................ AAAACGCGCAACACGGAGGGATCTTACATAGC 73055 28 100.0 32 ............................ TGATCAATATACACTTGCAACAAATCAGGATT 72995 27 82.1 0 ...........T.....T..-...A.G. | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.5 32 GCTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TACCTTACAGTGCAGACACTTATTTACATCGTATTGGGCGCACTGCTCGAGCGGGAAAAAAAGGGGTTGCTGTTTCGTTTATTGAAGCTCATGATTACAAATTGTTGGGCAAAGTTAAACGCTACACTGATGAACTATTAAAAGCGCGTACTATTGAAGGTCTAGAGCCTCGTACTAAAGCGCCTAAAGATGGTGAAGTGAAAACAGTCAGCAAAAAGCAAAAAGCGCGAATCAAAGCAAAACGAGAAGAAAAGCAAAAACAAATACAGCAGAAAAAAGTAAAAATACGGCATAAAGATAGCAAAAATATTGGTAAGCGCCGTAAACCCAGCGGACAAGTCAGCCAAACTGATTAATTTATTATACAGGTAACCCTTTTTTCTTAATGAGTTTTTTATCTAATAAGATCAAAGGGTTATTTTTATAGCTAAAAAAAGGGTTTTCGTATATAAAATGTGCAAAAGCTTGATAAATATTGAGGTCTGAATTAAACTGCCATA # Right flank : CGGAAAATAAAGCATCGGGTACTAATTGTTGTGCAAGCCAATTTAGTCTGTTTTGCCTATTTTATCGTTGTACATTTTGTTTTTAACTTGATAAGAAGGGCAAAAAGACAGCCGCACTTTTGTCGGTATGTAAAAGTGCGGTTGATTTTTCTTCTGTTTTATAGCGCCTTATTGGGTTGCTGGGGTACCGTATTTTTGTGCTAACTCGTTATTTAGTTGTGTAAACTCATCAGTGATTTTAAGTAGTACATCTCTTTTCACCAGTAACGCTTGTCCACCAGCTTCGGAAGGATTTTGCTGTAGTTTTACATTATCTGTCATGAGTTCTGATGAAGTAACAAGTAAGATTTTTGCTTTTTCTTTTAGAGCACGAACTTCTGCACTATAAATAGCTAATGCATCTAATTCTTTTACAATACTATTAATTTCTTTTGAAAATGTAACTAATAGAGTTTCTAAGGCTTTTTTGTCACCTGATTGCAAAATTTCAACTAGTTGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //