Array 1 7-705 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYPV01000078.1 Salmonella enterica strain CVM 43752 43752_contig_78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 68 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 129 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 190 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 251 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 312 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 373 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 434 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 495 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 556 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 617 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 678 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTAGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1602 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYPV01000033.1 Salmonella enterica strain CVM 43752 43752_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1 28 96.6 32 -............................ GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 61 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 122 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 189 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 250 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 311 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 372 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 433 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 494 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 555 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 616 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 677 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 738 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 799 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 860 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 921 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 982 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1043 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 1104 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [1146] 1146 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1207 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1268 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1329 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1390 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1451 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1512 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1573 29 96.6 0 A............................ | A [1599] ========== ====== ====== ====== ============================= ====================================== ================== 27 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //