Array 1 132353-130798 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFJX01000018.1 Escherichia coli strain 46-4 contig0018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 132352 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 132291 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 132230 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 132169 29 100.0 32 ............................. TGCGCGGAACGGAGATTGTAAATATCAAAATC 132108 29 100.0 32 ............................. ACACAGGCGCGAAAACAATCGAACGCGCTAAA 132047 29 100.0 32 ............................. GGAGGATGTTCGGTCCCGGAACTAAACCGGCA 131986 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 131925 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 131864 29 100.0 32 ............................. CGTGGAGGAGAGGGCGACGCGCTGGCAGACAC 131803 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 131742 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 131681 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 131620 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 131559 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 131498 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 131437 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 131375 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 131314 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 131253 29 100.0 32 ............................. CAATTCATAAATTAATTTACTATTTTGAGTGC 131192 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 131131 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 131070 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 131009 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 130948 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 130887 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 130826 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 159381-158132 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFJX01000018.1 Escherichia coli strain 46-4 contig0018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 159380 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 159319 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 159258 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 159197 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 159136 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 159075 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 159014 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 158953 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 158892 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 158831 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 158770 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 158709 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 158648 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 158587 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 158526 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 158465 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 158404 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 158343 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 158282 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 158221 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 158160 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //