Array 1 31943-30142 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEJO01000016.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039522 scaffold_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31942 29 100.0 32 ............................. GGACTGACGGATAAATCATATATTGAAACGGG 31881 29 100.0 32 ............................. TGCTCGGGGCATGTTTCTAAACGCCCCTCGGG 31820 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 31759 29 100.0 32 ............................. AGCTGGAAGCCGCAGAGAAGCGCATAGCAGAA 31698 29 100.0 32 ............................. GCATCCGCTAGCCTCACGTAAGTTAAAGTTAA 31637 29 100.0 32 ............................. GCGCGTAACGCCACGCTATCAGTCTGGAACAT 31576 29 100.0 33 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTGC 31514 29 100.0 32 ............................. CCCGATATACAGAATTATCGGGCATCCATGAG 31453 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 31392 29 100.0 32 ............................. CGTTAACTAAAACGTACAAAACAGGGAAATAA 31331 29 100.0 32 ............................. GTGGCTTGACGTGACACAGGGGCTGCCGTGGT 31270 29 100.0 32 ............................. AGTTTCCCAATCTTTCGCCACGCTGGGAAATC 31209 29 100.0 32 ............................. GAATTTTTACGGGTGATATTTTTTCTCATTGT 31148 29 100.0 32 ............................. GCGTCAACGCGGTGAACCGGCGCGCCGAGGAA 31087 29 100.0 32 ............................. GTGTTTTCTGCCGTCCACCGCGTGGATGGACA 31026 29 100.0 32 ............................. TGACGCTCGGTGATTCAGGGGCAACCATTGCG 30965 29 100.0 32 ............................. GCCAGGCCGGGATCGGTGGGGTTATCGACGAG 30904 29 96.6 32 ............................C ACGGCATCATCAACCGAGACAAGCCCCAACTC 30843 29 100.0 32 ............................. ACCGAGAACGTTCTACCTTTGATTACCTTCCC 30782 29 100.0 32 ............................. GACGCGTTAACTGGCCTGCGTGATGCTATCGA 30721 29 100.0 32 ............................. AATTATTTATCAGTCCCATAGTTGTGTCTCTT 30660 29 100.0 32 ............................. CACTCCGCGCCGCTGGCATCCATGTTATCGAA 30599 29 100.0 32 ............................. AAAATTATCGAGGATGAATTTAAAACAGGTGC 30538 29 100.0 32 ............................. ATTTGCCCCTCATCTTTCGCCCTTAAGCCGGG 30477 29 100.0 32 ............................. GTACGGAAATTGTAAGCCCCTGGATTCACAGT 30416 29 100.0 32 ............................. CTCCAGCAGTTGGGCATCAACAGGAGAAACGG 30355 29 100.0 32 ............................. GCAGCGCCGGTGTGGCACTTGCATGAATCGTT 30294 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 30233 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 30171 29 86.2 0 TAA.........T................ | A [30144] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 48656-48079 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEJO01000016.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039522 scaffold_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48655 29 100.0 32 ............................. ATTATGGACGACAGCTATATGAAAACGCATTG 48594 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 48533 29 100.0 32 ............................. GCGAGATTAAAGCGGGCTAACTATTTGTGAGA 48472 29 100.0 32 ............................. TGCGCAGATTCCGAACCGCTTACGATGAAGTG 48411 29 100.0 32 ............................. TTTGCCTGGGCTGGTTCGCCGAAAACGGCGCG 48350 29 100.0 32 ............................. GCTGCTCTCTCACGGGGGTGGCCTTTTTTATT 48289 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 48228 29 100.0 32 ............................. CCGGTGCTAAGTGGGTGCGTCTGCGTGATTTT 48167 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 48106 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTATTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //