Array 1 105-552 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPT01000085.1 Vibrio cholerae strain A120730Z1 NODE_106_length_6444_cov_21.147268, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 105 28 100.0 32 ............................ TGATTGAGTAGGCACTGTGTCTTGATGTATTC 165 28 100.0 32 ............................ TCTCAGGGGGGATTGGGTTGTAGAGGGAGAGC 225 28 100.0 32 ............................ ACCAAGCTGGATGAAACTGCAAGCGCTGGCTC 285 28 100.0 32 ............................ AAGCGCTGAGTTCGGGCATGGATACCACAAAC 345 28 100.0 32 ............................ AGATGGGCCGGAAAAAACAGCGGGATTACGAA 405 28 100.0 32 ............................ TCGGTCTAGCACTTGCTGTCCCTTTGGCAAAC 465 28 100.0 32 ............................ TGTCGATGGAGTTTCAATATACTCGGCAATGA 525 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGTTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATAG # Right flank : ATAGTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCAATGAACCGCGGTGGTTACGGCTGTTGTGTTTAGGTTTGGTTGTTATGCGTTGCCAGCCCCTTAGGCGGGCGTTATGCTTAATCCATAAAAATCAGCAGTTTGCCGTTGTCGATTCCTCTGGCATTTCGTTCAGGTATTGTCGGCAATTCAATATTGTTTTTCGCTGCCTAATGAAGCAACAATGTGTCTGGCGTTGTAAATTCTGAGTGATTGCCTCATTGGGTTTTTGCGTCCACGCGAGGTGAGTTTTGCTCTCTCAAGTCGCTTTGAGCAATTTGGTGCCTTTACTTATGGGCTGAAAGTCTGTCGGCAATTCAATATTGTTTTTCGCTGCCTAATGAAACGGCAATGTGTCTGTCGCTGTAAATTTCAGTGTCATTGCCTCATTGAGTTGTTGTGCTCATGCGTGGTGAGTAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25255-26483 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPT01000028.1 Vibrio cholerae strain A120730Z1 NODE_29_length_39543_cov_32.460411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25255 28 100.0 32 ............................ ATCATTCTCGAGAGCCGCAACCTTTGCAAGCT 25315 28 100.0 32 ............................ TTGCGTGTTGGTGCTAAAGCCTGCGTTTTTTG 25375 28 100.0 32 ............................ GTTTTTAATGGTCACACGAGAGTCTTTCATCG 25435 28 100.0 32 ............................ ATCCCCCATATCCGCTATCAAATGACAACTAC 25495 28 100.0 32 ............................ AGATTGTGCGCATAACGCCAGAGAAAATGACT 25555 28 100.0 32 ............................ CCGATTAACAACTTGAGAGAACAAATACGTCC 25615 28 100.0 32 ............................ TTGTTTTCTTCGATGTGCTTCTGGATGGATTC 25675 28 100.0 32 ............................ AGTCTGTAAATTATCTTTTGCCAATTGTAGGC 25735 28 100.0 32 ............................ TTGCGGCTTCTCGTTGCGGTTGATTTCAGCAC 25795 28 100.0 32 ............................ ATACGGTAAGGAACCAGTTTGATGCCGTCGTC 25855 28 100.0 32 ............................ ACGAATACGAATAAACGGTTCAAGGTCTTGGT 25915 28 100.0 32 ............................ AATCGGGAGAAATGATTATCACGCAAGACGGG 25975 28 96.4 32 ...........T................ GCAATCAGCAGATAGATCACGCCTGCCTTGGC 26035 28 100.0 32 ............................ AAGCAGCAGACCGAGCAGCAGACCGAGCAGAC 26095 28 100.0 32 ............................ TCAACTGAATTGCTGCTTCATAGTTCGCTTCG 26155 28 100.0 32 ............................ GCCCTTCACGAACGGGTCGCCACACTTGCCGC 26215 28 100.0 32 ............................ TGGTCGATGTTAAAGCGATGGGATAAAAACTC 26275 28 100.0 32 ............................ TTTTTGTAAAAACTCGATTCAACGCTTGAAGA 26335 28 100.0 32 ............................ GAATTACGATAGTATTTCTGACGCAACTGATA 26395 28 100.0 32 ............................ AAAGCATCTGCTCGTCACGGTCAATCAAGTCT 26455 28 92.9 0 ......................G.A... | T [26475] ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGACCTCTCGTCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGGCGCAATTTAAGCAGTGCAAAGCTGCGGCGCTTAATTGCACGAGGGAGTATCAATAAAGAAGGTGAGCAGCGCTATAAAAAGAAGATGCTGAGCCAGAGTATTAAAGCTCCTTATCTTGACTTACAGAGTGGCTCTACAGGGCAAAAGTATCGTAAATTCTTTGAGTTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCTTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : ATCTTTATATATCTTATTTTTGCAGATCTCAAAAGTTGGGATTATATAAATGACAGTTTGCTTTGAGATTTCCCGCTTACTGGCTGTATATCCGAAATTGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACTAAAATCGACCATTAATGCCTCTACGGATATGAGTCAGTCTGCCTTTTTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGGAACTACGATGTGACGTTAGGAGATACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGTTCACTGGCTGGCCTTGGTGAACTCTCGGAGAACTTCCTTGGTGTGGGTGAGGGCTTTCGAGATTTGATGTCGTCTGGCTCGGATTATCTGCAAGAGAGTATGACTCAAGATGGCCGTGACGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //