Array 1 33472-32529 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWLU010000034.1 Nonomuraea cavernae strain SYSU K10005 Scaffold34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33471 29 100.0 32 ............................. GACGCGCTCATAGAGGAATGGGGAGGCGAGGA 33410 29 100.0 32 ............................. AGGCCGAACGGGAGCGCATCCGCCAGCAGTAC 33349 29 100.0 32 ............................. TACCGTGATCACGAGGTGGAAGAGGCCACGCT 33288 29 100.0 32 ............................. GCATCTACGCCCGCGTCACCACCCTCAAATCC 33227 29 96.6 32 ............................A ATCCGGTTAGGCAAAGTCGTGCGATAAAGGTA 33166 29 96.6 32 ...C......................... TCTCCGTCACCTGGACACGCGGCGGCCAAGCT 33105 29 96.6 32 ...C......................... GTCTGCAGGACGCTGTCAGAGAACCCGCCGAC 33044 29 96.6 32 ...C......................... GTGCCGAAACTGATCAGGACCACCTCGCCGCC 32983 29 93.1 32 ...A......G.................. AAGCCAGCGGCGACGTACTGGGGCGGGCGCGA 32922 28 93.1 32 ...A.................-....... GTGCGGAGGTAGCGAGCGCGGACGGTGCAACC 32862 29 89.7 32 ...A..........T...A.......... GTCGCCATCAGAACAGCCGCTCGAACATGGGG 32801 29 93.1 32 ...A......................T.. AAGAAGGCCGGCAGCAGCGACACCGCCAAGAC 32740 29 96.6 32 ...C......................... CGCGACGACCTCATCGCTGCTCTCCGAGAGGA 32679 29 93.1 32 ...C....T.................... CAGAACAACGCGATGGGCGCTATCAACCGGTA 32618 29 89.7 32 .CC.........T................ TCGAAATCGGGCCCGGCCCCGACGATGTGGGC 32557 29 96.6 0 ..........T.................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 95.7 32 GTGGTCCCCACGCCCGTGGGGGTGAACCG # Left flank : CATGGAGACGCTTGAATTCATCGGGATTCATGGCTTGAAAGCACGGCATGCACTTGCCGATATCATGCAGGCCCGCCCAGAAGGCAACGAGGCGTCCAGCCTCTTCTACTCCCACCCCGAGTGCGGCGGCGATAAAACGCTTGACGTTCGGTGATAGATACTGCTTCCACAGAACGTCCACCATGGCGGCCGTGTCCAGCAAGTGGCAGATCAGCGGGTACGGGCGCTCCAGACCGTACGATTTGCCCCAAAGGAGTAAATCTACATCTATTTGTCCGACTTGATTTGCGTGCACCCATCTCCCTGTCGCTGGGTGTGAATGAAGCGCCACGAAGTGGTGCGCGAGGGAGCATATGGCGCATGGTGTTGATCCGCCAGGCTTCTGAGATTTCTTCCGTATGGAATTTTATTCCGTACGTGTTTGTGGAGCTTGATGATCACCGACAATAGCCGACATTTGCATCATCGCAGGTCGCGTCTATCCTGACTGCTCAGGAAGT # Right flank : TGGGTACGCCTCACCGACCGAGGCCGCTTCTAGGGCGTGTTTCGAAAGTGGGGTTGAGCAATGGCGTGCGGGATTCTGGAGGGCCGTATGCTGCATTCGCATGAAGGATCTTGGTAGTCAGGTCGCGTACTGGGATAGCGTCGGCGTCACGAAGACATTCACCCACCCGGTGAACCCCGACTGGCTGGAAGGGGTGAGCCGGACCGCTCGGATTTTGGACTACGGCTGCGGGTACGGCCGTGTCATGGCTGAGCTGGGCGAACACGGCTTCACCGATGTGTCCGGCGTGGACCTGTCTCCCGGGCTGATCGCGCGGGGCCGCCAGTTGATGCCTGACCTGCGCTTCGCGGTCCTGAAGTCTCCGCCGGAACTGACTTACCCACCGGCGAGTTTCGACATGGTTCTGCTATTTGCGGTGCTGACGTGTGTCCCCGACGATGACGCCCAGCGGGCGTTGGTCGCCGAGCTGAGCCGTGTCCTGGCGCCCGGCGGGCTGCTCT # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCACGCCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 42506-45949 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWLU010000034.1 Nonomuraea cavernae strain SYSU K10005 Scaffold34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 42506 29 100.0 32 ............................. ATGCCCGGGTCATCTGGCCCCGGATAGCTCAG 42567 29 100.0 32 ............................. GTCAACGTCTGGCGGCGCTAGCCGTGCAGCGC 42628 29 100.0 32 ............................. GTCGTGCTCGCCCGGACCTTGCGCCTGGTGGC 42689 29 100.0 32 ............................. TCACGGCCGGCTTCCAGCCGGGAGACGAGGCT 42750 29 100.0 32 ............................. TTCGCCTTCAAGGTCACCAAACTGGAGAAGCG 42811 29 100.0 32 ............................. ATCACCACCACGCGCGAGATGCTGCAACGGCA 42872 29 100.0 32 ............................. ACGCCCCGGTCTGCGGGGATGACGAGCTTGCC 42933 29 100.0 32 ............................. CTCGGCGGCCAGCTCGGCGTGCAGCTCATCTG 42994 29 100.0 32 ............................. ATGATCGGCCCGCTCTGTGCTACCCATATCCA 43055 29 100.0 32 ............................. GGTCAGCGGCTTGTCGGTCATGCGATCTCCCC 43116 29 100.0 32 ............................. GTGTCCAAGAGTGCGGGCCTGACGCAGAACGC 43177 29 100.0 32 ............................. CACCCCAGACGGCACCGGCCATGCGCTGGATA 43238 29 100.0 32 ............................. TCGAACCACCTGCTGCACGAGTGGCGGCAGTG 43299 29 100.0 31 ............................. TCCACCGTGGCCGCCGACGCCATCCGCCACG 43359 29 100.0 32 ............................. GCGGCGCGGCGTCGCCGGCCGACCGGCCCGGC 43420 29 100.0 32 ............................. GTCCGCCCGGCCCTCCCGGAGCCACCAGAGAG 43481 29 100.0 32 ............................. ACGCGGGTGGCGGTCCGGAAGTCCGCGTCGCA 43542 29 96.6 31 ............................A AGAGCTGGGGCTGGAACGGAGGCGGCTCGCG 43602 29 100.0 32 ............................. AGGCGATCGACAATTTCGTCAGGCTGAACTCG 43663 29 100.0 32 ............................. GTGACACTCACCGTTCCCGTCGAGGTTCAGAC 43724 29 100.0 32 ............................. CTGTCGCCGATGGCCGAGGGCAGGCCCATCGG 43785 29 96.6 32 ............................T GTAGCTCAGCAGGGAGAGCACCCGGTTTGGGA 43846 29 100.0 32 ............................. CTCCTCAATCCGATGCTGGACAAGGTCGGCTC 43907 29 100.0 32 ............................. GTGAACAGGCTTTCGCTTTCGCCCCAGAACTT 43968 29 96.6 32 ..A.......................... CTGATCGTCCGCGTGGCCACCAGCGGCCACGG 44029 29 100.0 32 ............................. ACTGCGTCGCCTGGACCGATGCCGACAACACG 44090 29 100.0 32 ............................. GACATGAAGCTGACGCCGCTACCCTCGCTGGC 44151 29 100.0 32 ............................. GTCCGCGCGGTAATTCGTATGGTGGGCATACG 44212 29 100.0 32 ............................. GCTCCATTCAGTGCACCAGGTGCGGGCAGGTG 44273 29 100.0 32 ............................. TCGTCCGGCAAGGGCGGCACGGGCGGCAGCCA 44334 29 100.0 32 ............................. CTGTACGTCGTCGCCATGAGCGCGATTAAAAC 44395 29 100.0 32 ............................. GGCCACGTCCCCGCGAGCCGCAGGCCGGCCCC 44456 29 100.0 32 ............................. GCGATCAGCACGGCGGCCATGTGGCTGTGGCA 44517 29 100.0 32 ............................. CCTCCCCCTTCGGGGGGAGAGTCGCGTGGAGA 44578 29 100.0 32 ............................. CCGGCGTGCTAGCGCCTGGCGCTCTCGGTATG 44639 29 100.0 32 ............................. TACCCCTTGAGCAGCTCTGGACTGATGTGGGC 44700 29 100.0 32 ............................. CCGACCAGACCGTGACCTGTGTCGTCTACATC 44761 29 96.6 32 ............................T GCGAACCGGCGTATTGCCGACGCACAAAAGGC 44822 29 100.0 32 ............................. GATTATTGATCAATGACTCATGTTTCCAGCGT 44883 29 100.0 32 ............................. TGGTTTCGAACGGGCCGAGCACGAGGTTCTGG 44944 29 100.0 32 ............................. CATCAGACCGCCCTCGTCCTGGCCTTGCGCCC 45005 29 100.0 33 ............................. CCGGCCGCGGCCGTCGAGGTCATCGCCCCTGGA 45067 29 100.0 32 ............................. TGGGCTGGAGTCGGTGGGGAGCGTGGAAGGGT 45128 29 100.0 32 ............................. CGCCACAGGACGCCCTCCCTATCTCAAGATGA 45189 29 100.0 32 ............................. ATGTTCGACGTCGAGGGCCGTGAATACGAGGC 45250 29 100.0 32 ............................. CGCGCCCGGGGCTGACCCGGTGGGCCGCGCAC 45311 29 100.0 32 ............................. GTCGTAGGCGCACTCGGATCCTGGGTCGTAGG 45372 29 100.0 32 ............................. GACTTCCATTGGACGTCAATGGGGGTAGTGTT 45433 29 100.0 32 ............................. CCGTTCGGCTACGAGCAGGACGGCGTCACCCT 45494 29 100.0 32 ............................. TGGGTGCACGAGATGCGCGCCAGGCTCAAGGC 45555 29 100.0 32 ............................. AGGGCGGGCCCGTCCAGGCCCGCCCGGACGAG 45616 29 100.0 32 ............................. CACGACCACACGCTGCTCACCCTCGTGGGCCG 45677 29 100.0 32 ............................. GCATCGACGCCCTCCAGGACCTGGCGGCCACC 45738 29 100.0 32 ............................. TCGACCCGGCCACCGTCGAGCAGCTCCACGAC 45799 29 96.6 32 ..................A.......... GCCACCGTGACCGCGCACCGCCACATCCTGCT 45860 29 96.6 32 ............................A TCGTCGCGCGAGCAGGTGGCCCAGTAGTTGGT 45921 29 72.4 0 ....................AAC.GGGGA | ========== ====== ====== ====== ============================= ================================= ================== 57 29 99.2 32 CCCGTCCCCACGCCCGTGGGGGTGAACCG # Left flank : GCCGGCGTCAACTACAGCGACGACCTCGCCGGCGACATCGAGATCCCGTGGTAGTCCCGGTCACCTCGGGAGCCTCTTCGCGCCATCGACCAGGTGAGCCATGGCATCCATGATCGTCATATCGACCACCGCCGTTCCCGACCACGTCCGCGGTGCCCTGTCCCGCTGGCTCATCGAGCCCGCCCCCGGCCTCTACGTCGGCACCGTCTCCGCCCGTGTCCGGGACGAACTGTGGTCCGCCGTCAGCGGCTGCATCGCCGACGGCGCCGCCGTATGCCTCCACCCGACCGACAACGAACAAGGCTTCACCATCCGCACCGCAGGCGAACGCCGCCGCCACGTCGCCGACTTCGACGGCCTGCAGCTCATACGCTTTCTTCCCGAACCTCCATCCCAGCCGTGAGCTGCCGTCCTGCCTTGCATAAGGCCAGGTCACGGGCACGACAAATACCGACACCCGCAAAGGCCCAGGTCAGTAGAGTTTCCCCAGCTCAGTAAGC # Right flank : AGGAGCCAGACCCCCACCTGCGCCGAAAGCACGTAGATCGCTTGGATGATGGTGTCCGATGTCAGAGCCGCTCCCCCACGCCCGAGGCGGCATGCTCCATCTGGACTTGAGGCCAGATATTTTCTCGGCCTGGCTATCTCCCGTGCCCCTGATCGCGGCTCCCACCTTCACGATCGAGCAATCGGGACTGCTCGGTGTGCTCCCGTTCGACCTGGTGCGCAATACGCGACTGGTCCGTACCTCGCTCGACAAGTTCGACGTACTCCACGCGCACAGCCTGTTCGATGTCGCGCCGCTCAGGGGACATTTCGGCACGTCGGACGACCTCCTGCTGAGCAACAGTGCGCTCCTGCTGAAGAAGTGCGCGATTCCTGCGAGCGGCCTCCGCTCTCTGCACGGCATCACTGATGTCCTGAGTACGGGCACCGCGTTGAGCGGTGGCGAAGTCGCGATTCAGGTCGTCATAGCGACGCCGCACCAGCGGCCACGCGGCCCTTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGTCCCCACGCCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42433-41408 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWLU010000007.1 Nonomuraea cavernae strain SYSU K10005 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 42432 30 100.0 34 .............................. ACGCCGTCGGGGAGTTGGACTTTGTAGCCGGGGC 42368 30 100.0 35 .............................. ACGACGAGCTCACCCGACACCCGCTCGGTCGCGTT 42303 30 100.0 37 .............................. CGGTGCCGCCACATCCGCTTGGCCTCCGTGGTGGCGG 42236 30 100.0 38 .............................. AGATCCACCCAGCGGGCACCGCACGCCTCACCACGCCG 42168 30 100.0 38 .............................. ATCAGCGCGGCCACCACCACGGCGTACCCGGCTGAGGT 42100 30 100.0 33 .............................. ATGTGACCGGCACCAGACCGGCCTCTCGCACCT 42037 30 100.0 37 .............................. CTGTTCACCTCGTTTGCCAGCTCCAAGAGGTACGCGG 41970 30 100.0 34 .............................. GCGCGTGGCTCCCGCGCGCTGGTGACGGGCCGAC 41906 30 100.0 35 .............................. GCCACATCGCCCACGGACCTCCGCCGGGCTCGGCG 41841 30 100.0 37 .............................. GACGCGCTTCGGGGTGTCAGCCACAGGTCAGTCCTCC 41774 30 100.0 35 .............................. CCGGGCGACGATGCTGGCGCGTCACCATGCGGCCA 41709 30 100.0 37 .............................. AAAATCGACGTGGTGCCCGCCGTGACGACCGGGTCGC 41642 30 100.0 37 .............................. ATCGCCGCCATCAGGTCCACTCCACCTGGAGCACATG 41575 30 100.0 37 .............................. GCGGAGGACATCAGTCGGCCGTACGGCGTGAGGTCCA 41508 30 100.0 41 .............................. CGGTCGAGCTTGCGGCGCCCCTCGATCTTTGAGCCCATCGG 41437 30 93.3 0 ..........T..............A.... | ========== ====== ====== ====== ============================== ========================================= ================== 16 30 99.6 36 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : CGTACTCGTGCGGCTGGTTGTGCTGCCGGGCGATGCGGGCCGTGAGCTGGTCGAACAGGTCATCGTCGATCAGGTCGGCGGCGAGGACGCCGCCGGGGTGCGGGCCGTCCGTCATGTTGCTCATGTACTTGACCGTCCATCCACATATTCGGCCCCTGGATTCCAGCACCGACTTTTCCGCCCCGGACCCTAGCAAGCACGACCACCTCACCACCACTGGAGGGCGGCTCCACCTGACTGCTCCACACGGACGACGGCCCGCACAGCTTGTTGAGATGCGCGTTCGCACAGGTCAGCGCCAAAGGGGCGGAGAAACCGCTGCACGGTGGCCGGGTAGGCGATTCGAGGGCTACCCTGCATCCAGGACGTCACGCGAAACCAGTTTACGATCATGGTTTTGCAGCGAACCTCCCGGGGATTCTGCACAACCGGAGGTTCACTGCAAAATCAAGGCTCCAGCCACCGCAGTCGTACGCATTGACCTGCGGCTTTACCATGGG # Right flank : GCGTTGGACTCGGTCTGCTCAATGGCGGCAAAAAGGAGTCCCAACCGCCCCTCTGTGGCGACGCCGGTACCAGGTGGCCGAGCACCCAGTCTTGACCCTTGGGAGTTCCGGCAAATACCCTCAAGCTGGATGGAAACGGTGTTTCGCATTCCGGAACATTCCAGACGGCGGCGGAAGGAACCACGGTGCGGCCCCATGTCGAGCTGATCCAGGAAGACGACTACGTATGGCATGGCGCCGAGCTCGTGGCCGGTGAGGGGCGGGCGAGTGAGCGCCGGCTGTCCGTCGACGAGGAGGACGGCTCCTCGTCGTTGCGCGTCGACTTCCACACCGACTGGGGTCGTGGGCCGGGCATCCATCACGCCAACACCGAGTACTACGTGCTCGACGGGTCGATGACGTACGGCGGGCGCGAGATCGGCAAGGGCGGCTACGTCTACGCCCCGAAGGGGGTGCCCACTGACGCGATCACCTTCGCCGAGGGCACCAGGATCCTGCAC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 45138-44446 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWLU010000007.1 Nonomuraea cavernae strain SYSU K10005 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 45137 30 100.0 35 .............................. GAGGTGCCGAACGTGACGTTCGTGCACACGCTGTG 45072 30 100.0 34 .............................. ATCTGGACCTCCTGCCACGGCGTGGCCCTGCCCA 45008 30 100.0 37 .............................. TAGAAGACTGCCGCGCCTACGCGCGGTTTGCTCCCCC 44941 30 100.0 37 .............................. GTGTCGAGCCCTGCCAGGTTGAGGGACAGGATCGGGA 44874 30 100.0 38 .............................. GAATAGATCGTGTCCTCATGGCCACGGACCACGATCGT 44806 30 100.0 40 .............................. CGCATGAGCGCGTTCAGCGCGCCGACGACTTCCAGGCCAT 44736 30 100.0 35 .............................. ATGTCGCCAATGATCTTCGCCAGCTTGGCGCGGGT 44671 30 100.0 37 .............................. CCGTTGCTGCCTTGGATGTGTGAATTGATGAGTTGTC 44604 30 100.0 34 .............................. GTGCTCATCTGGGTGGCCTGGTGGTTCAGCCCGA 44540 30 100.0 35 .............................. ATGTCGCCAATGATCTTCGCCAGCTTGGCGCGGGT 44475 30 96.7 0 ......................A....... | ========== ====== ====== ====== ============================== ======================================== ================== 11 30 99.7 36 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : AACGTGGCGTATGACGAGCTGCTGTACCTCGAAGCCCTGCAGCTCACCCGTACCTGCTTGGAGGGGACGCCGTACAAGCCCTTCAAGATCTGGTGGTGAGGTCACGTGTACGTGGTCGTGGTCTACGACACCCTGGCCAAGCGCAACGCCGCCATCCTGCGACTGTGCCGCCAGTACCTTCACCACGTGCAACGGAGCGTCTTCGAAGGCGCGCTGAGCCCTGCCCAGCTACGGCGGTTTCACCACGAGGTCGAGAGCGTGATCGACGCCGGCTACGACAGTGTGCTCGTCTTCACCTTCCCTCCCGGCACGACACCCGAACGCCAGGAATGGGGCATCGCCCAACCCGCTCCCAGCGATATCCTGTGACCGGCACCCAGCATCTTGATCATGAAATTTGCAGCAGACCTCCCGGGTTTTCAGTACAACCGGAGGTTCACTGCAAAAACCTCATCCGACGGCCCGAACATCACACTTCTGACCTGCGGCTTTACCGTGGG # Right flank : ACCGTGTGTGGCTGCCAGCTCTCTGCCTCTCCGCTCCCCATGACGGCTTGCTGGAGATCGAGAAGGTTCCGTGTGAGTCGTGTCAGGCGGATGGGTGACCCGAGTCGCGGCTTCTTCAACGTCTTCGATCTATATCAAGATCGTGTACTCGCTCCGATACGCGTCGGCTTGAGCGCAGACCACCCCGTCCACTCCGGAATGGATGGAGTCGAGCCCGGCTGGCATCAGGTGAGTACGTCGCGGGACGCCTGATCAGCCCTTCGACCGCAAGTAGGTCATCCAGGCATGGCCGGCCTCGGCGGCGCGGGCACGGGCTTCCCGTACCTCTTCCGGGCCGTACCGAGCCTTGTAGTCGCGGAACAGAGTCCAAGCCGCCGCGATCCCGACGACGGCCGCCTGGGGTGCGGTCTTCCATGGCGGCAGGGTGGACAGCAGTTCGTCCGCCTTGACCGGGGTGTGCCCGGCCTCGACGAGCCCGGGCGCGAAGAGGGCCGCGTCCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 54178-53487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWLU010000007.1 Nonomuraea cavernae strain SYSU K10005 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 54177 30 100.0 34 .............................. ATCCATTTCGGCACGCGTCGGGCCATACCGTGAA 54113 30 100.0 35 .............................. AAGATCGTCATCGGCAACATGCTGATGGAAATCTG 54048 30 100.0 37 .............................. GTCGGCGTCGTACGGCCAGTCGGTGTCGAGCTCAGGC 53981 30 100.0 34 .............................. ATCCATTTCGGCACGCGTCGGGCCATACCGTGAA 53917 30 100.0 35 .............................. GCGAGCGCGGCCAAGTCTCCGGCGTCGACCGCGGT 53852 30 100.0 36 .............................. CGCTTCCACTTGCCTGCGACGAAGGCGTTGCGGGTC 53786 30 100.0 36 .............................. GCGGCGAGCTGGATCTGGCCGATGGTGTGCGGCATG 53720 30 100.0 37 .............................. ACTCCGAGATCACCCTCACCCTCTTGACCGGCTGCCC 53653 30 100.0 38 .............................. GCTGTGTACCGCACGACGCCCCGGTGTGTCACCTCGAC 53585 30 100.0 39 .............................. GCGCCAACTGCCTCGTGATGTACGCCCTGCTCCTGACGA 53516 30 93.3 0 ...............GT............. | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 99.4 36 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : TGGATCTAGCTGCGACCCCTCGTAGGGGTGATGAGGACATGAACTGGTCGCCTTTTACACCGCCCGTCTCGAGTTGCGACCCCTCACAGGGGCGATGAGGACGCGTACGGATTCCTGCGCGGGATCTACCTCCAGATGTTGCGACCCCTCACAGGGGCGATGAGGACCGTCTCAAGGGGGGCGCCGGTCTCGGGGTCCATGCCAAGTTGCGACCCCTCACAGGGGCGATGAGGACTGGCGCATTTCCGTGATCTGCTGGTTCACGCTCGGTTGCGACCCCTCACAGGGGCGATGAGGACACCGCGCCGACGCCCACCGCCAAGAGCAGGGCTTCCGGTTGCGACCCCTCACAGGGGCGATGAGGACCCGCAAACGCTGGCCAGGTGGTTCACGTACACGCAGCTAGTTGCGACCCCTCACAGGGGCGATGAGGACGGGCGACTGACCGCCCCTGCTCTCGCGTGGGCCGGGTTGCGACCCCTCACCGGGGCGATGAGGAC # Right flank : CCCTCGTAGGGGCGATGAGGACCCCACGGTAAAGCCGCAGGTCAAGCCGTACGAATCTGGTGGCTGGAGACTCGGTTTTGCAGTGAACCTCCGGTTGTGCAGAAACTCCGGGAGGTTCGCTGCAAAACCATGATCACCAAGGGCAGCGATGACGTCCTGGACGCAGGGTAGCCCGCGAATCGCCTTCACGGCCACCATCCGGCGGTTTCTCCGTCGCCTTGGCGTTGACCTGCACGGACACGCAGCCCAGCAAGCCGCTTGAGTCTTCGTCCATCTGTGTCGGGTGAAGGGCCGAACCGGCGGGAGGAAGCAGTGAGGTTGCGGATCGAGGTCACCACGGCGGCGACCGAACTCGCGTGGGCGAAGGTGCTGGCACCAGGCCGGTCGTTGGCGTACGACCTGCTGGCGCACACGGCACCCGAGCTTGGACGGGAGTTGCATCATCGGGGTACGGGACCGCACGGCATGGTGCCGCTGGGGCATGGAGCACCGGTGTTCCC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 72740-70530 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWLU010000007.1 Nonomuraea cavernae strain SYSU K10005 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 72739 30 100.0 37 .............................. TACAGGTAGGCGACGCCGATGCCGCGCGGGATGCCGG 72672 30 100.0 38 .............................. CCGTGGTGGACGCGGTAGCCCAGGTACGACGGGTGCAG 72604 30 100.0 34 .............................. CCGGGCGGTTTGAGCTTGGGCAGCTTGCCGTCCA 72540 30 100.0 33 .............................. CTGCTGCCGTGGCTGCTGGACGACCTCGGCGGC 72477 30 100.0 35 .............................. CGCTCGCCGAGCGGGCCTCCATGCGGCGAGCCCAC 72412 30 100.0 35 .............................. CTGGCGCGGCGGGCGAGGGTGCGTTGGGTTCCGTA 72347 30 100.0 38 .............................. CTGTCGTGGAGGCGGTAGGTGAAGGCGATCATGGGGGG 72279 30 100.0 36 .............................. CGTCATCACCAGGCGGGCAGGATGACCGCGACCGAG 72213 30 100.0 35 .............................. ACCGGAATCACAACGTCGAACGGGACCACCAGGAT 72148 30 100.0 38 .............................. CGGCGGCCGGCCCCCCTTGCGGGGGCCGGCCGTTTTGC 72080 30 100.0 36 .............................. ACGAGCTTCCGCCCGCCCTTGCGGTAGCGGTCCACG 72014 30 100.0 37 .............................. ATCAGCCGCAAAACCGCATCGGCACGCGTGTGCATGC 71947 30 100.0 36 .............................. CGCGCCCTGGTCCGTCATCCAGGAAGTCTCACTCAT 71881 30 100.0 36 .............................. CGGCGCCCAAACTGCGGGCGCCGCGCAAGCCCCTCG 71815 30 100.0 39 .............................. CGGATGACACAGCCTCGCCACGATCCCGGCTATTCCGAC 71746 30 100.0 38 .............................. ACGCGGTCACGGTGACCCTGCACGCCGATGACGTGGCG 71678 30 100.0 36 .............................. ACGACGACACCCAGGTACGCAATGACGTCACGGTGT 71612 30 100.0 36 .............................. ATCCACCTCGCGCCGCACGCCTCACCACGCCGCAGA 71546 30 100.0 36 .............................. ACGAAGCGCGCCCCCTACTTGAGCACGCAGATCTGA 71480 30 100.0 34 .............................. ACCACCTCGACACCCTCATCGAGGGCAGCGTCTC 71416 30 100.0 35 .............................. CTCACGTGACGCTGGATGGACATCGGCGCTATGAG 71351 30 100.0 35 .............................. CTCACGTGACGCTGGATGGACATCGGCGCTATGCG 71286 30 100.0 36 .............................. ACGCCGAGTGTGAGCCGTCCCCCGGGACGTTCTGGA 71220 30 100.0 37 .............................. TCCCACCGGTCGCGGAGGGTGTCGAACTCGTCGTCCG 71153 30 100.0 36 .............................. CGGAACGTGGCGCCGCACCCGCGATCACAAGTCATC 71087 30 100.0 35 .............................. ACGGACCAGATGACCGCTTCCATGGGCTTATACAT 71022 30 100.0 35 .............................. GCCGCGAGCAGGCCCACGTCGGGGCCTGCTGACGA 70957 30 100.0 38 .............................. CGGGGTCCCGCACGCCTTGCACTCCTGGCGCCGCCAGA 70889 30 100.0 35 .............................. AAGCTCATGACCCTCCCGTCCGTACCATCGTGGGT 70824 30 100.0 33 .............................. CTCCACGAGCGGCTGCCGGTGATGAGGATGCGG 70761 30 100.0 37 .............................. CTGCCGTTCAGGTGCTCGGCGATCCTCTCCGGGATGA 70694 29 93.3 38 ...C....-..................... GCGTATGAGGCCGCCTACGACATGGCCATGACGGGGCG 70627 30 90.0 35 ...C.....................AA... TCGGGGCTGTCGCCGTGGCTCACCTTGACGTAGAG 70562 30 80.0 0 ...C.T..T........C......TA.... | CC,C [70545,70548] ========== ====== ====== ====== ============================== ======================================= ================== 34 30 98.9 36 GTCTTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : CTGCGCCCAGTCCAGGTGCGCCCGTACGCGGTCGCGGATCGCCTCGGCCCCGGCCGCCGAGATGACCCTCACGTCCTACGGCGCGCGCGTGGCGGCCTCGCGGGTGCGAGTGGCGGTGGCGCAACGGCAGGCGGTGCTACTACTGCCGTCACCACGGTGAGTGGCGGCGTCAGTGGTGCAACGACCGCGACGGCCGCGGCAACGACAACATGAACCGGAACTGACCTCATCCGGCCGGACGGTCCCGCGATGACGGTCGCCCCGCGAGGCATCTCCTCGCGGGGCGACCTGCCCCCTCGCGTCGCCCGCACCCCGCTTTCGAGCAGGATCGGCCAGCCCTCGTGACGCATTCAGCGGTAGGCTACGGGTGATCCGATCAGCTTGTTGATCATGGATTTTGCAGCGAACCTCCGGGGTCTTCCGCACAACCGAAGGTTCACTGCAAAACGACCCTTGACCGGCCTCACCGTTGGGCGTGTGACCTGCGCCTTTACTCTGGG # Right flank : AATCCGGATCGCTCTGCGGGGACCGACCGTGCGGTCCCCGCAGAGCGTGATGGTTACTGCGAGCGATGGGGAGTCGTACGGCACTGGGAAGCGACCCAGTCCAGGTCCGCGAGGGCGACCAGGTGGATGAGGTGTCGGGCGAAGCGGTCGGCGGCCGTGGGGGTGATCCCGTATTCGTTCGTGATCCAGTGGACGAGCTCGGCGCCGTTCGGGGGCGCGTCAGCGCAGATCCGGGCAAGCAACGGCCGGTAGCGTGCCGTCGCGGTGCGCACGCCGGCATCGCCTGCCAGCAGCTGACCCACCGTACGCCGTGCCGCATCCTTCTCTTCCTGGTCAAGGAGCAGTTCCTCCGGAGACTGCGCCAGTGAAGTCGATGCGGGCGGGAGCTCCTGTCCGAGGTACCCCGTCACGTTGGCCCGGTAGAAGGCAGGGCGGAGTGTACGGAGACCGTCCAGGGCTTCGCGCAGGATGCGCCGTGCCGGAAGCAGGTCCACGCCTAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //