Array 1 90625-89681 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEUYE010000005.1 Escherichia coli strain 1585H contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90624 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 90563 29 100.0 32 ............................. CCGTCGGCAGCGGCGTTAAATGGGGCGCGCTT 90502 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 90441 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 90380 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 90319 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 90258 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 90197 29 96.6 32 ...........................T. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 90136 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 90075 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 90014 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCCGGTTTTTATGCA 89953 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 89892 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 89831 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 89770 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 89709 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 117363-116173 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEUYE010000005.1 Escherichia coli strain 1585H contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 117362 29 100.0 32 ............................. CGGCGCTCCTTGGTGCTACAGGCACTCTCCCC 117301 29 96.6 32 ............................C GGAGCGATATTAACAGTGCTACCGACTGCGGC 117240 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 117179 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 117118 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 117057 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 116996 29 100.0 32 ............................. CATTTTTGCGTGACGAGCTGCGCCGCGTTCTG 116935 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 116874 29 100.0 33 ............................. GATATGGCAATGAGTAAATATACATATTTAAAC 116812 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 116751 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 116690 29 100.0 32 ............................. TGGCAGTGGCTTTGTTTTTTGCTCTGATATAT 116629 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 116568 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 116507 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 116445 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 116384 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 116323 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 116262 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 116201 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGATTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //