Array 1 79432-79940 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG698719.1 Prevotella veroralis F0319 Scfld7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================= ============================ ================== 79432 49 98.0 27 ................................................C GGACGGTGAAGCATGGCAGGCTATTGA 79508 49 100.0 28 ................................................. AAAGATGATATAAATACTATAGCATTTG 79585 49 98.0 28 ...............................................T. CACGAGAGTTCTCAAGAGTATCTGAATG 79662 49 100.0 28 ................................................. CAGCATTAATACCATAACCTAAGTAATG 79739 49 100.0 27 ................................................. CAAATTTTTCATATCACATAATAAATT 79815 49 95.9 28 ...............................................TC ATATCTTTGACGTTGAGCAGCAGGAGTA 79892 49 100.0 0 ................................................. | ========== ====== ====== ====== ================================================= ============================ ================== 7 49 98.8 28 GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACAT # Left flank : GAGAACGGAAAAGAGGCTGCAAAGAGAAATATGTCGGTGCGCACGTATGTGGAAGTTATCCTTGGACGTGTATATGACGAGGAGTTTGACGAACCGCGCCCAGTGGCAAAGATTCCTGGCTTAAACGCTTATCTAGAGTTGCGTGGTTGTATGGACGAACTAAAGCCTGGTAGTAAAGAAGCCGACCCCGAATTTGCTCTGGAGATCCTTAAAAAAATGTCTGCATGGGCGCAAAATATTTGGAATAGAAAGGATAGGAAGAAATTGGCTTCAGTAAAGACAGAGCAGCAGCCGTTGCCGTCATGGGAAGAGGATTTCAACCCTGCACTTTTCCCAGCTATTTATCCAAAGCATGGAATAGGACTTGATTTAGTCGACCCCTCTCGTAGACCAGAGTTATCTTACGTTCGTACTTCAACCGATGGAACTGGTTATACGCATGAAGATATAGAGAGAATTAAGAGCGTGAAAATGGGTAATATGATTCGTGGTGAGTTCTA # Right flank : AAAGATGATATAAATACTATAGCAT # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:-0.5, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 9-901 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG698724.1 Prevotella veroralis F0319 Scfld12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================= ============================= ================== 9 49 98.0 28 ...............................................A. CGGAATTTGTCCAGTCATAAAAGTCATA 86 49 98.0 28 ................................................T GAGTAAGTTCTTTTTATACTTCAGACCA 163 49 95.9 27 ...............................................AC GAAGATATATACTTCCCCTATCACCGT 239 49 95.9 27 ...............................................CT CGAATGCGGGAAAAATGTCAGAGCATG 315 49 100.0 27 ................................................. GTTTGTCATTTTGAGATTTCGGAAGTC 391 49 100.0 28 ................................................. GCCGTGAAACGAAAATCCGCAGAAGCAG 468 49 98.0 27 ................................................T GAGTAGATTCTTTTATACTTTAATCCA 544 49 100.0 28 ................................................. ACATTTGAGTTAGGAGTAGCAAAATTAG 621 49 95.9 29 ...............................................GT TTATCATCAACGTACTTGTCCCTGATTCA 699 49 100.0 28 ................................................. ACATTTGAGTTAGGAGTAGCAAAATTAG 776 49 95.9 28 ...............................................GT TTATCATCAAGTACTTGTCCCTGATTCA 853 49 98.0 0 ................................................C | ========== ====== ====== ====== ================================================= ============================= ================== 12 49 98.0 28 GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTA # Left flank : TAAGATACG # Right flank : CTTTGCGGTATCATTTGGGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACAACCATTTAAGCGTACGCAATACAATATATTAGGTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACCAACATTTGAATTTGGCGTGGCAAAATTAGGTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACATAAAATTATAATAATTGGTTTTACTTTTAGTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTCGTCAACAAAACCTTTATCGTAAGAGATCGTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTGCACCAGTACTTTTGTTTGGTGAATAGGGTTGTGATTTGCTTGAAAATATGTACCTTTGTGG # Questionable array : NO Score: 4.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:-0.5, 7:-0.03, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1060-1415 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG698724.1 Prevotella veroralis F0319 Scfld12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================= ============================ ================== 1060 49 95.9 28 ...............................................CA ACATTTGAATTTGGCGTGGCAAAATTAG 1137 49 95.9 28 ...............................................AT AAAATTATAATAATTGGTTTTACTTTTA 1214 49 100.0 28 ................................................. GTCAACAAAACCTTTATCGTAAGAGATC 1291 49 98.0 27 ................................................G CACCAGTACTTTTGTTTGGTGAATAGG 1367 49 95.9 0 ...............................................GA | ========== ====== ====== ====== ================================================= ============================ ================== 5 49 97.1 28 GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTC # Left flank : AAATATGTACCTTTGTGGTAGCAACAACAACTAACATTTGAGTTAGGAGTAGCAAAATTAGGTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACGTTTATCATCAACGTACTTGTCCCTGATTCAGTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTAACATTTGAGTTAGGAGTAGCAAAATTAGGTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACGTTTATCATCAAGTACTTGTCCCTGATTCAGTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTCTTTGCGGTATCATTTGGGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACAACCATTTAAGCGTACGCAATACAATATATTAG # Right flank : TAGTGCAAAATGGAATAGCAAAAAGGCTGTTGTGATTTGCTT # Questionable array : NO Score: 4.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:-0.5, 7:-0.02, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 2523-2321 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG698713.1 Prevotella veroralis F0319 Scfld1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================= ============================ ================== 2522 49 95.9 27 ...............................................GG TATAATTACCGTACACACTAACCAATC 2446 49 100.0 28 ................................................. TGATGACTAATGAGTGCCTCAAAAGCAG 2369 49 100.0 0 ................................................. | ========== ====== ====== ====== ================================================= ============================ ================== 3 49 98.6 28 GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT # Left flank : GACGGTGTAATGCAAATTGCATCCAATCTTGAAAGCCGGTCCCAGTTCGGACTGGGGTCTGCAACCCGACCCCACGAAGCTGGATTCGCTAGTAATCGCGCATCAGCCATGGCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCAAGCCATGAAAGCCGGGGGTGCCTGAAGTCCGTGACCGCAAGGATCGGCCTAGGGCAAAACTGGTGATTGGGGCTAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGAACACCTCCTTTCTGGAGAGGATGTTTATCGGTTAAGTAAGTTGACAAGTATTTAAGTATATGAGTTGACGAGTTAATGGTAATCAAGAGATAAATTGGAACCTTTGGTTCGTTTTTCTTCTTTGTACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTC # Right flank : AAGTAGATTTTTCTTATACTTCAGACCAGTTGTGATTTGCTTGAAAATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGTACGTCCATGAACAGATAGTTCTCCTCGGAGCCATACCCTGAATCGGCTACGACTGTCTTGGCATAACGATGGTAACGTGAGTTGAAGGACTCCAAGAAAGAAGGAAGTGCGAGCGTGTCTGTACGGTTAGCATAGAGTGCAAAGTTGGTGATAAACTGGTTCTCAGTTGCTATCTGCAGATTATATCCAGGCTTAGTCTGTCCGTTCTGCATAGCATCCTCCTTCATGTGCATAAACGTGGCATCAGGGTCGGTCTTGCTGTAGGAGTTTCTCTCTCCCATAATCTCAAGGTGTTGGTCATACTCCTGGAGTTTATTACGTTTCTTCTCAAGCTCTTTAAGCTGT # Questionable array : NO Score: 4.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:-0.5, 7:-0.09, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.10,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 4642-4921 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG698713.1 Prevotella veroralis F0319 Scfld1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================= ============================ ================== 4642 49 100.0 28 ................................................. AAGGAGATTCTTTTTATACTTCAACCCA 4719 49 100.0 28 ................................................. TCGTGCTGTAATTATATATCTGATTGTT 4796 49 95.9 28 ...............................................CC GTCAGCATTCCCAACCACACGTGGTATA 4873 49 100.0 0 ................................................. | ========== ====== ====== ====== ================================================= ============================ ================== 4 49 99.0 28 GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT # Left flank : GGATACGCGTTACTCACCCGTGCGCCGGTCGACGTCCGAAGAGTGCAAGCACTCAACGCCGTTTCCCCTCGACTTGCATGTGTTAAGCCTGTAGCTAGCGTTCATCCTGAGCCAGGATCAAACTCTCCATTGTAAAATATCATTTGTGACAACTTATATAAATACAAGCCATCCGTTTGTCTCTGTGTCAGAATGCCTATCCTTAAGTATCAAGTTAAAAAGCACCTACTCAATTAATTGATCGGTTCGTTTCTTTTACCCATCTGTTTGATTCATAAACAAACAGACGCTTCTTGTACTACTTCTCTGTTTATGTAAATCTTTTCAAAGAACTCTTTTCTTATCACTCTATACGTTATAAGCAAACCGCCTATTTCGTAAAAGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTCAGTTCT # Right flank : TTCGTGCTGTAATTATATATCTGATTGTTGTTGTGATTTGCTTGAAAATATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTACTGATCGTTGCCTTGGTGGGCTGTTACCCCACCAACAAGCTAATCAGACGCATCCCCATCCATAACCGATAAATCTTTCATTCTCTTCTGATGTCATCTAAGAATTACATAAGGTATTAGTCTGCCTTTCGGCAGGTTATCCCTTAGTTATGGGAAGGTTGGATACGCGTTACTCACCCGTGCGCCGGTCGACGTCCGAAGAGTGCAAGCACTCAACGCCGTTTCCCCTCGACTTGCATGTGTTAAGCCTGTAGCTAGCGTTCATCCTGAGCCAGGATCAAA # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:-0.5, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.31%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 20-681 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG698734.1 Prevotella veroralis F0319 Scfld22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================= ============================ ================== 20 49 98.0 27 ................................................T AACATTAAAATGGCAAGTCGTTGACCG 96 49 98.0 28 ................................................G CATGCTGTACTACATTGCCGAAAGGTGA 173 49 98.0 27 ................................................C GGTAATTAGCCTATCGAGGTGGAATCC 249 49 95.9 28 ...............................................CG AACTGAAGTGCAGTAGGCAACGCGACAC 326 49 95.9 28 ...............................................CT AATTCTTTCCCGGTGTATTCTCCACGAA 403 49 100.0 28 ................................................. AGTATTTAATTTTTAATTTGAATAACTG 480 49 100.0 28 ................................................. TGGAGATAGTATTAACCCGTTCAAAATG 557 49 95.9 27 ...............................................AC ACACGATTACTATTTAGTGGGTCGAGC 633 49 100.0 0 ................................................. | ========== ====== ====== ====== ================================================= ============================ ================== 9 49 98.0 28 GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTA # Left flank : AGGATGATTATAATACATTG # Right flank : TGTCGATAG # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:-0.5, 7:-0.04, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //