Array 1 86765-83940 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHMV010000009.1 Aerococcus urinae isolate Au-45-U14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 86764 32 100.0 34 ................................ ACAAACCATTGGTCTGCTAAAGCAAGGGATAGAA 86698 32 100.0 33 ................................ TAGCGGTACTTACCTAAAATTGGGAAAGTATAA 86633 32 100.0 35 ................................ AATCAAAATGGAATGCAATTAATGGTCGTGTGCAG 86566 32 100.0 35 ................................ AAAAGGTGAACCGCTATTAATCTTTGCTCCACCCG 86499 32 100.0 35 ................................ CCGTAATTAACAGCCAAATTTCCCCTCTCAATTGA 86432 32 100.0 35 ................................ TGTTAATAGCATTATTACGAAACGCAAATATTAAA 86365 32 100.0 34 ................................ AACAGCCTCTTGGTTAGGCACGTTACCTAATTCT 86299 32 100.0 38 ................................ CCCCCATAAGCCTAAGTTAACCAGCCATAAAAGTAAGC 86229 32 100.0 34 ................................ CTCTTTCGGTGGTTGGGCCTAACTCCTTAGGCTG 86163 32 100.0 34 ................................ AGACATTGCTTACTATGTTTCACAACGTGGTACA 86097 32 100.0 34 ................................ TGACGCTGTAGGCTTTGAGACCACAGTCACATGT 86031 32 100.0 35 ................................ ATTGCAATTACGCTAAGAATGGGGTAACCGTGGAC 85964 32 100.0 35 ................................ GAAGAAACCTAAGGCTTTGCTATTTAGCGATAATC 85897 32 100.0 34 ................................ CTTTTTGTGTTGAGTACTAGACCGCCTTGCTCAT 85831 32 100.0 36 ................................ TTTATCCTTAAGTACTTCAATCAGTTTAGCAATACC 85763 32 100.0 35 ................................ AATTACACGAGCAGTAATTCGGTTAATACGGTATT 85696 32 100.0 34 ................................ AGCAATTTCGAAAGGGTCATTAGTCTTGTATCTC 85630 32 100.0 34 ................................ AACGAAAACACAAAGTACATCACAGCCATTTGTG 85564 32 100.0 36 ................................ CATTTTTTAATCACCCCAATTTAGCCAGCCACGAAC 85496 32 100.0 35 ................................ AAGAAGCCTTTTCAGTTGCTTTAGAAGTAGGCTAT 85429 32 100.0 34 ................................ AGCTAACTTCCAAACCACTATTTTTGATCTGTCA 85363 32 100.0 34 ................................ GTACTTAAGAGACACGCAAGCGAACCCCGAATAC 85297 32 100.0 34 ................................ CTAATAGGCAAGTTGTATTAACTAAATTTATGGA 85231 32 100.0 34 ................................ AATGACTTGCAGCTTAGGTATGCCCTCGCTGTCG 85165 32 96.9 35 ..........T..................... TTTTCTTGCCTTAGCTCTTTTAGTCGATCAGAAAC 85098 32 96.9 34 ..........T..................... TAAGAAGTGGACCAATGTCGGTAAAAAGCTAAGC 85032 32 96.9 34 ..........T..................... TTTGTCTATAGTGTCTTTATTATAGTCAAAAGTG 84966 32 93.8 35 ..........T...T................. AAGAGATTCAAAGCTGGGCAAAAGAGATAGGAGAT 84899 32 96.9 34 ..........T..................... TTTAAACGCTGTTCGTGGCTGGCTGAATTGGGGA 84833 32 96.9 35 ..........T..................... AGATCATGGATACAAAAGAAGATGAGAATGAAAGA 84766 32 96.9 35 ..........T..................... AGCAATACATGCATTAATTTCTTGATTCAAAGATT 84699 32 90.6 34 ..........T.A..............G.... AGTACCAGCCATTTTTAAATTTAAAATGTTTTGT 84633 32 96.9 34 ...........................G.... CAAGTAACCTGGTTAGGCGATGAACGCACTGTAG 84567 32 100.0 34 ................................ TATAACTTTTTACCCTAAAGCCTGTCATAATGCG 84501 32 87.5 34 ..........T.A........A.....G.... TGATCCGATATGACGTGACAGACGTATCTCTTAA 84435 32 93.8 34 ..........T.A................... ATGCTTTAGGCTTTTAGGCTCTAATGGCCGCCCA 84369 32 84.4 33 .........CT...A........T...G.... ATCCCGTAGTCTGTGGAATCCTTGTAGTTACCT 84304 32 90.6 35 ..........T..........A.....G.... TTCCGTGGAAAATTCTCAAAAGACAAAATTTCTGC 84237 32 93.8 35 .............T.............G.... AGTAACATTCTTATCTACCTTTTGCAGGCCGAATG 84170 32 96.9 35 ...........................G.... TTCTTGCTTGGTGGTCTTAGCTGGTGGCTAGGTGG 84103 32 84.4 34 ...A......T....A.A.........G.... AATGCTGATGTCGATATATTACCGATTTGACTAA 84037 32 87.5 34 ..........T.A....A.........G.... TACCAAGTGACCGATCAAAGACAAAAAGCGGTAG 83971 32 87.5 0 ............A....A.........G.T.. | ========== ====== ====== ====== ================================ ====================================== ================== 43 32 97.0 35 GTCGCAGGCTACGCGCCTGCGTGGATTTAAAT # Left flank : AGTTGCTCGCACGCTATATCCGTGGAGACATTGATTACTATCCGGCATTTATTAGTTAAGGGTGATTTGAGATGATGGTTTTAATTACTTATGACGTGAATACTGAAAGTAAGGCTGGTCAGAAACGTTTACGTAAGGTAGCTAAAGTTTGTGTTGATTATGGTCAACGGGTTCAAAATTCTGTTTTTGAATGTAGTTTAGATCCTGGGCAATTTGCACTCGTTAAATCGAAGTTAGATGATATCATAGATAACGAGATCGATTCGATCCGCTTCTATAATTTAGGTAAGAACTGGGATCATCGAGTACAGACTTTAGGACGGGACGATACGTATCACCCTGAAAAGGATGTCTTACTCCTATAACGAACCTCAAGCACACAGATTTATAGTGAAGGCTTCGGATGAAAATTGGCATTAAAAATATAGTATAAGTGATTATTTTGCTCTTTTTGTTCCACTTATATTATGAAAAAAGGATGAAAACTTATAAAAAGAGCT # Right flank : TTACATGCGGCTAAGTGGTTCAAATCAGGGACAAATCTGCAGTTTTCCTTTCAGCAAAACATGACTATTTACGCCAAGAAATTAGCCCTTGTCAGCTCCTCCAACAGAGAGCTCAACAAGAGCTTTTCTTCTGCTGTAACATCACGAAAACACTAAAAATTAACTAATTCTAAAAATAAATCACACCACCACTAAATCCGATCACACTTGATCTTTTTTACTAAGTTGACAGTGGCACTTAGACAGGCTAAACTATCAGTAAATCAAAACATTATTAAGGAGATTACATCATGACTTTAGTATTCATTTCTTGGCAAGGCTGGCGTAGAGTAAAGTGAGATAACTAAGAACGGTTAGACTCGCTTTATTTTGGTACCCCCAATTGAAGAGGAGTCTATGCCGGATGTAATCGAAGAGAATGAAGCCGCATAGATGGCAGTTAAGTGAGACTGTGAGTTTTTACACAAGTCCGCTTAACCTTTCTATGCGGCTTTTTTCTG # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGGCTACGCGCCTGCGTGGATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.50,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [34-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //