Array 1 526939-527375 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP039886.1 Neisseria flavescens strain ATCC 13120 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                   	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	==================================	===================================	==================
    526939	    34	 100.0	    35	..................................	TATTTTTAAAACAATAGGGGGGTGGGTCTCTTGGG	
    527008	    34	 100.0	    33	..................................	TGCTTACAAAAATCTTGTTTCTGATTCTCTTGG  	
    527075	    34	 100.0	    33	..................................	CAGACGCCTGTTTTAGGGTCATATCCGCGCCGT  	
    527142	    34	 100.0	    33	..................................	AGCCTATGAAAAGGTGGAAGCATTGGGCAAGGA  	
    527209	    34	 100.0	    32	..................................	AAAGTCTAAATCTACGGTTTGGGTGGGTATGT   	
    527275	    34	  97.1	    32	C.................................	TATTGCCTATTAAATCGCGTCATACCGCGTTG   	
    527341	    34	  97.1	     0	C.................................	|                                  	G [527371]
==========	======	======	======	==================================	===================================	==================
         7	    34	  99.2	    33	TCCAGCCGCCTTCAGGCGGCTGGTGTGTTGAAAC	                                   	       

# Left flank :   TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAGGCAAGGCTGCGACGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAATATTCGGTGTTCGAATGTGACATTGCGCCCGACCAGTGGGTTGTTTTAAAGGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACTGGCAGTGGATGTGTTTAAAGATACGTTGATTGTGTGAATCGCCAACCTACAGTTCTCATGAAAATGCGGCAGGGTTGGCAAATTGGGATTGTTCTTTAACAATTAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCACGCTCGCGCTTTTCTTGGGAGCTTAGCGAGATTAGGTTTTCGAAACCTGATGTAGTAAGGCTTTTAAGAGAGGC
# Right flank :  CCTATATTCACAAAAATGATAAAATATCTTTATGACTAGAAAATCCTACCCAACAGACTTAACAGATGCCCAATGGCAAGCGATTGAGCCGCATTTTAACCGGCTACGCCACTACAAATGGGATAAACGTGAATTAGTGAATGCCGTTTTGTACATTACCAAAACAGGTTGCCAATGGCGTATGCTGCCCAATGATTTTCCACCTTATCCAACCGTATGGAGTTTCTATCGCAGAGCCAACCAATCAGGCTTATGGGATAGGATTCTTTTGGCATTGGTTCAAAAAAACGTTTAATCCATCAAAAACAAGCGATGCCGACTTATGCCATTATTGATTCGCAAAGTGTCAAAACAGCTTCCGGCGCACATGATAAAGGTTTTGACGGAGGTAAAAAAATCAAAGGCCGTAAGCGACATATAGCTGTTGATACGTTGGGTAACCTATTGTCTGTTGTGGTTCATGCAGCCAATATCCATGACACAAAAGCAGGTATTTTTGT

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TCCAGCCGCCTTCAGGCGGCTGGTGTGTTGAAAC
# Alternate repeat :   CCCAGCCGCCTTCAGGCGGCTGGTGTGTTGAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-8.30,-8.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,1.01   Confidence: MEDIUM] 

# Array family : I-C [Matched known repeat from this family],   
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