Array 1 51-932 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCQK01000196.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE990 990_HEIDELBERG_S7_trrimed_contig_205, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 112 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 173 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 234 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 295 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 356 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 417 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 478 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 539 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 600 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 661 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 722 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 783 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 844 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 905 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGTTTTGATACGTAGTATTCATTACGCCTCCTAGG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8890-10553 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCQK01000085.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE990 990_HEIDELBERG_S7_trrimed_contig_91, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 8890 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 8951 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 9012 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 9073 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 9140 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 9201 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 9262 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 9323 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 9384 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 9445 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 9506 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 9567 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9628 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9689 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9750 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 9811 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 9872 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 9933 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 9994 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 10097 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 10158 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 10219 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 10280 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 10341 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10402 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 10463 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10524 29 96.6 0 A............................ | A [10550] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5391-5827 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCQK01000180.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE990 990_HEIDELBERG_S7_trrimed_contig_189, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 5391 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 5452 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 5513 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 5574 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5635 29 100.0 32 ............................. ATAGTCGCCGCTTTCTATTTACCGAACGGAAC 5696 29 96.6 74 ...G......................... AATAAGGCGCGGCGCCACCCTCGTCTTTAAGCGGGTTCCCCCCGCGGGCGCGTTCCAGCCCACGTTACTCGATC 5799 29 79.3 0 .C.G..........G..A..T.......C | ========== ====== ====== ====== ============================= ========================================================================== ================== 7 29 96.6 39 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : CGGCCATGCGGCTAGATACCCCCGCAGCGAT # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.51, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //