Array 1 29901-27936 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXD01000045.1 Salmonella enterica isolate STY38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 29900 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 29839 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 29778 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 29717 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 29656 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 29595 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 29534 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 29472 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 29411 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 29350 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 29289 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 29228 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 29167 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 29106 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 29045 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 28984 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 28923 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 28862 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 28801 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 28740 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 28679 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 28617 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 28514 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 28453 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 28392 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 28331 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 28270 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 28209 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 28148 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 28087 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 28026 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27965 29 96.6 0 A............................ | A [27938] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5417-6909 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXD01000062.1 Salmonella enterica isolate STY38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5417 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5478 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5539 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5600 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5661 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5722 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5783 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5844 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5905 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5966 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6027 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6088 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6149 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6210 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6271 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6332 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6394 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6455 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6516 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6577 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6638 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6699 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6760 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6821 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6882 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //