Array 1 213-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATOI01000124.1 Serratia marcescens MC6000 S_marcescensMC6000-1.0-214.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 212 28 100.0 32 ............................ GATAAGGATAAGGCTCGACGCCGTGCAGCCGC 152 28 100.0 32 ............................ ATTACTGAACACCCACCAGCGGAGCAGTCAAA 92 28 100.0 32 ............................ TTCGCTTCCAGCTCTGCCAGTAGTTCGAGAAC 32 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AA # Right flank : AATAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 74970-73863 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE375731.1 Serratia marcescens MC6000 Contig95, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 74969 28 100.0 32 ............................ ATACAGTCGGAGATCAACCCGGCGGCGAACGG 74909 28 100.0 32 ............................ ATAACTGACGCTTAGCGGGTCAGTCTTCCACC 74849 28 100.0 32 ............................ TCAGTGTTGCCGGTGCCGCTTGCTGCCGCCAG 74789 28 100.0 32 ............................ TGATGGCTCAAGCAATGAGCATAAAGGTTGGC 74729 28 100.0 32 ............................ ATGATCGGCCCGCTGCCCAAGCGCATGCGCGC 74669 28 100.0 32 ............................ ATAGCGCAGTCCTTCACGCGATTAGCGTATGC 74609 28 100.0 32 ............................ GTATGCACTGTGGACTCCAGGTCATCGAGGCT 74549 28 100.0 32 ............................ AGAAAGGCATTCCGCCCTGGAAGATTCACCAC 74489 28 100.0 32 ............................ ATTCGGACGCGCTGCTGAGCGCCCAGGCGAGA 74429 28 100.0 32 ............................ AATAGGTTGGCTCGTAAAAGTGAATCGTGTCC 74369 28 100.0 32 ............................ CGGGTGCGTGGGCGCCCATCATTAGCTAAAAC 74309 28 100.0 32 ............................ TGGCACCGATTGGCAGGATATTACCGGCACGT 74249 28 100.0 32 ............................ ACGAGCATGGATAGTCGGGTGCGCGTGTTCGT 74189 28 96.4 32 ..........................G. GCCCCGCCAGCGCCAGCAGTGCCGGATGACTA 74129 28 100.0 32 ............................ TGGCTAATGACCCAACTTACAGCACGGCAAGC 74069 28 100.0 32 ............................ AGGGAAATCCAGGCCGATGAGGAAACGCGCAC 74009 28 100.0 32 ............................ ACGGAGGTGGCCGGCAGCTTGATGGAGAAGAT 73949 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 73889 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 86013-83705 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE375731.1 Serratia marcescens MC6000 Contig95, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 86012 28 100.0 32 ............................ TATGGCTATCTCAACGATCCAAACTTCTTGCC 85952 28 100.0 32 ............................ AGAAAGCCGGAGAGCTGGCCGACGATCAGGAC 85892 28 100.0 32 ............................ ACTCTATGCGGCAAACCTCACCGACCCGCATG 85832 28 100.0 32 ............................ TTTGCTCCAGGCAGCTCCAGGTGCATGCGTCA 85772 28 100.0 32 ............................ ACAGATGCGTTATATGGGAACCCGTTCGCGGT 85712 28 100.0 32 ............................ TGATTCACAGCGGGCAAAATGCTGTCGGGTGC 85652 28 100.0 32 ............................ GCGAACAAATAACCTACGTTTCCAGGATTGAT 85592 28 100.0 32 ............................ AGTTATCGATTGCCGAGCGCGCCGCCTTTGGT 85532 28 100.0 32 ............................ CCACTGAGCAAAGCGTGGGTCATTGACGTAAT 85472 28 100.0 32 ............................ TTCACAATCTTTCCTTTCTCGTCGCGGTGATA 85412 28 100.0 32 ............................ TGCCGTATCGATGTCGGTCAGCACCACCCGCC 85352 28 100.0 32 ............................ TGTCCGAGGGTATCGATTGCACCCGAGAGGGA 85292 28 100.0 32 ............................ TTACTGGCCTTCTCCAGTCTTTGAGCCTTTTC 85232 28 100.0 33 ............................ ATGCTCATTTTCGCGGGCAAACGGCGCAAATCG 85171 28 100.0 32 ............................ GATCAGCGGTAGGGATGAAATCGCCCGTTCCG 85111 28 100.0 32 ............................ AGTAAGTGGCTTTGGTAGGTGGTGCGATTAAC 85051 28 100.0 32 ............................ GACGTCGGCGCGGATTTCGGCATGGAGGCGCC 84991 28 100.0 32 ............................ ATCAGGGGCATGCAACATGGCAGAGGATAAAC 84931 28 100.0 32 ............................ ATAGTTACCCCTTGCCGAGTTAGAAAATGACC 84871 27 96.4 32 .......................-.... ATGTTTTTTTTCTCAAACCCCTGAGCGGCTTT 84812 28 100.0 32 ............................ TGGAACGCAGTAGTGCGGGGGTCAAATACGAT 84752 28 100.0 32 ............................ GGACTTCAGCCTGTGCTAAGAGCGTGACGAGC 84692 28 100.0 32 ............................ TCCTGAGGTGTTTGACCGCGTCTTCGGATTTG 84632 28 100.0 32 ............................ TACGCCACCGCCTGCAGCGGCTCCTGCCGATA 84572 28 100.0 32 ............................ TGTATCGAACATCGTCAATGTGACGGTAAATA 84512 28 100.0 32 ............................ GAAACTTCGCCATTCCATCCGGCGCCGTCGGT 84452 28 100.0 32 ............................ AATGATAATTTCTGCCGTGCCGGCATCCTCTG 84392 28 100.0 32 ............................ AGGGAATCGGTTGATATCGCGCTGGTACGCCA 84332 28 100.0 32 ............................ AGCGACCGGGAACCCGTTCGCGATCGAAACCC 84272 28 100.0 32 ............................ ATAGGGATCGTGGCGCGCGTCACCAGCTGATA 84212 28 100.0 32 ............................ TTGGGGTGACGGCTACGCCGGGACGCGCTGAC 84152 28 100.0 32 ............................ GTGCAGACAGCACTGGCACGATCACGTTAACC 84092 28 100.0 32 ............................ ATCATGGAAAGCCTTTATTCTAAAAAGAAATA 84032 28 100.0 32 ............................ TCGGCCTGTTCCCACGTCAGCAACCATGTGAA 83972 28 100.0 32 ............................ TAAGCAGCAAAATAAACCTCAACAGTCGAATG 83912 28 100.0 32 ............................ GATGGATACCATTGCCAATCAGGTGGCCAGCA 83852 28 100.0 32 ............................ TGGCGAACGTGGACTATTACGGCGACGCCGCT 83792 28 100.0 32 ............................ ACAAAACCTATTTCAGCCGGACGCTGCGCGAA 83732 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.9 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTATGACGGGTGCACTGCCGTACAGGCAGCTTAGAAAGGCGGCCGTCAGCTGCCCGTCGCTGCTTGCGCGTGCACTGCCGTACAGGCAGCTTAGAAAGTCCCCCTGCCAGGCACTCATGAGTCGACAGCGTGCACTGCCGTACAGGCAGCTTAGAAAAAAATCAGCCCAGATTGTTGCATATCAGGCACGTGCACTGCCGTACAGGCAGCTTAGAAATGCCAGCGTCACGGCGGGCTTCGACCTGTGCGGTGCACTGCCGTACAGGCAGCTTAGAAAAACGAGGGTAAATTCGTCGCCAAAATGAAGCAGTGCACTGCCGTACAGGCAGCTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGTGCACTGCCGTACAGGCAGCTTAGAAATTTCACTGCGCCGCCCTTCACGCCCCGGATGG # Right flank : ATCGGCCGAGCGGGCGTGAAAACGGTAGGAACGTGCACTGCCGTACAGGCAGCTTAGAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTGCACTGCCGTACAGGCAGCTTAGAAAATGGGAATGATGCCAAAATTTGCCAGTCCGGCGTGCACTGCCGTACAGGCAGAATATAGGAAAAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 86624-86176 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE375731.1 Serratia marcescens MC6000 Contig95, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 86623 28 100.0 32 ............................ ACGATGCCGTCGGTGTTCGCCGAAACGACGCT 86563 28 100.0 32 ............................ TGTGCGCAGATCCCTAACTGGATTTATGACGG 86503 28 100.0 32 ............................ GGCGGCCGTCAGCTGCCCGTCGCTGCTTGCGC 86443 28 100.0 32 ............................ GTCCCCCTGCCAGGCACTCATGAGTCGACAGC 86383 28 100.0 32 ............................ AAAATCAGCCCAGATTGTTGCATATCAGGCAC 86323 28 100.0 32 ............................ TGCCAGCGTCACGGCGGGCTTCGACCTGTGCG 86263 28 100.0 32 ............................ AACGAGGGTAAATTCGTCGCCAAAATGAAGCA 86203 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGATACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAGTCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCATCAGTGGTGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGGTTGCCGAACCCTTTTTTGAGTGATACTTTTAATTTATTGATTTTAAATCATATTTTTAATCGCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGTGCACTGCCGTACAGGCAGCTTAGAAATTTCACTGCGCCGCCCTTCACGCCCCGGATGGGTGCACTGCCGTACAGGCAGCTTAGAAATATGGCTATCTCAACGATCCAAACTTCTTGCCGTGCACTGCCGTACAGGCAGCTTAGAAAAGAAAGCCGGAGAGCTGGCCGACGATCAGGACGTGCACTGCCGTACAGGCAGCTTAGAAAACTCTATGCGGCAAACCTCACCGACCCGCATGGTGCACTGCCGTACAGGCAGCTTAGAAATTTGCTCCAGGCAGCTCCAGGTGCATGCGTCAGTGCACTGCCGTACAGGCAGCTTAGAAAACAGATGCGTTATATGGGAACCCGTTCGCGGTGTGCACTGCCGTACAGGCAGCTTAGAAATGATTCACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //