Array 1 1097898-1095835 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025612.1 Niveispirillum cyanobacteriorum strain TH16 chromosome eg_2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1097897 31 100.0 34 ............................... CATGGTCATTGTCCTATCGTTACGTTGATATTGG 1097832 31 100.0 34 ............................... AGTTCAGTCTCGCGGCGTGGATGGACACGCGAAG 1097767 31 100.0 34 ............................... CGCAGCCCCCACTGCTTTGTGCGTTGCCTGCAAA 1097702 31 100.0 34 ............................... CATGGCGGTGGCGCCGTCCATCCCTATGACAGCG 1097637 31 100.0 35 ............................... AATCTGATCCATTTCGACACGATGCGCAATCATGT 1097571 31 100.0 33 ............................... CGCCCCTGTAAAGCTGCCGGGATATACGGTAGG 1097507 31 100.0 34 ............................... TGTCGCGCCAAGGCATCGCGGAATGCGGTTTGCA 1097442 31 100.0 33 ............................... AGCGTGATCGAGGGGCTGCGCAGTCTGGACACG 1097378 31 100.0 36 ............................... GTCCGAAGCGTAACCCAGGACAAGGCTGACCGCCAA 1097311 31 100.0 34 ............................... ATTGAAATCTGGAACTACGGCAACCCTATCGAAA 1097246 31 100.0 34 ............................... ACGGTGGACGCTGGCCGCGTGCCGCCGAACTACA 1097181 31 100.0 35 ............................... ACGCAGACGCTGGTAGCAGCAGCTACCTTGGGCAA 1097115 31 100.0 34 ............................... AGGGCCAGACCGGCGGAAGATGATGCCTGCACCG 1097050 31 100.0 33 ............................... GCTCGCTTCACGTGTGCCCGCCGGCCTGGGCTG 1096986 31 100.0 35 ............................... GTCGCGCTGTGCTGCCTAGCGCTGGGTGTCGGCAT 1096920 31 100.0 35 ............................... TATGCGCGGGTGGAGGAGGTCACCTCGCCCATTCC 1096854 31 100.0 34 ............................... ATCGTTGCGCGCCGATCAACTGCAAGAGGCTATC 1096789 31 100.0 37 ............................... AGCGGCGGCTGCCGTCCAGCGGTCAACGTTATCACGA 1096721 31 96.8 35 .............A................. TGGTAAGTCCGCGGGGCAATCGGTGACAGGATGGC 1096655 31 100.0 37 ............................... CTTGAACTTGGCCCGGAACTGCCGGATCTGGGCGAAG 1096587 31 100.0 35 ............................... CCACGCGAGCACCAGGCTCCGCCCGACCCGTGAAA 1096521 31 100.0 34 ............................... GTCGTCTAATGGATCTGGCCTTGCCCGGCCAGAC 1096456 31 100.0 35 ............................... GTGGCGTCAATGCCGCTGGACAACGTCAAGAACGA 1096390 31 100.0 37 ............................... GGCCACGCCAGGCTACCCATCTGGTGACGGTGGTGGT 1096322 31 100.0 35 ............................... GTCAATGCCGCCGGTAACCTGCGGCCCGCGCTGAT 1096256 31 100.0 34 ............................... GCTGACCGGTTGCCCGTCTTATCCTCTATCGATG 1096191 31 100.0 35 ............................... ATATTGAAAAGGGCCTCTAACCCCTTAACGACCGG 1096125 31 100.0 34 ............................... AGATCGGAGCAGGCGGCGCGGGATGCTGGTTGCA 1096060 31 100.0 34 ............................... AGGCCAGAAACGCCCAGGTTGAAGAACCGCCGCG 1095995 31 100.0 35 ............................... GATTTCTGCCTTGGCCTGCGCCAGCGTCACGGCAG 1095929 31 96.8 33 ................A.............. CAGTGCTGGGAAAGCCAATTGCCACCCGATAGG 1095865 31 93.5 0 ..........G.........C.......... | ========== ====== ====== ====== =============================== ===================================== ================== 32 31 99.6 35 GTCGCCCCTTCACGGGGGCGTGGATTGAAAC # Left flank : ATAGGATTTCCTCATCATGTTGATGCTGATTACTTATGATGTGCGAACGGAAGACACGGCAGGCCGACGCCGCCTGCGTCGCGTCGCGCGCGCCTGCCAGGATTTTGGCCAGCGGGTACAGTTTTCTGTCTTCGAATGCGAGGTCGAACCGGCGCAGTGGGTGGCCCTGCGGGCAAGGCTGGTGGGAGAAATTGATCCGACAGTGGACAGCCTGCGCTTCTATCACCTGGGCGCCAACGCCGCCCGCCGCATCGAACATGTCGGTGCCAAACCGGCCCAGGATTTCGATGCCCCGCTTATCTTCTGATCCCGGGTGTTTCCCCCGCGCGAACCCCAAGCTGTCCGATAGATGGCGTACCGTTCGCGCTGGAAAAGTCACCTCAATAACAATATCTTAACTTCCGGAAGCAGAAGCGCCGCCGCCGAGGGCAGCGCCAACGCCCCCTGTTCGCGCAAGGCCGCTTCTTGCACCTTCTTGGACAAGTATATATTCAAAGGCC # Right flank : GCCTCCATAAAAAGGCCCGGCACACTTGTTGATTTCCACGCGGAACTGACCCGGGATTTCCATCGAGAAATGACCCGCCATTGAGCTATGCGGCGGGGTTTATGGTTGGGTCAAGGCATGTGGATTTCCCTTTCTTTTGGCGGATGCTGCGGCAGTGCTGGCTTTGAAACGAAAGCTGTCATTTCCGGTTTCGACGATGTGACAGCGATGTGTCAGTCGATCAAGCAAGGCGGTGGTCATTTTGGCATCGCCAAAGACGGTGGCCCATTCGCTGAAGCTGAGGTTGGTGGTTATGATGACGCTGGTCCACTCGTAGAGTTTGCTGAGCAGGTGGAATAGCAGCGCACCGCCAGATGCGCTAAACGGCGGGTATCCGAGTTCGTCCAGAATCACCAGATCCAGGCGTGTCATGGCCTCGGCCAACTGCCCGGCTTTTCCCTTGGTCTTCTCCTGCTCGAGCGCGTTGACGAGTTCGATGGCCGATATGAACCGGGCTTTAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTTCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //