Array 1 3285-781 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXRC010000021.1 Prevotella denticola strain SCHI0042.S.4 Contig_21_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 3284 47 100.0 30 ............................................... GTCTATGGTGGTAAGCCCATCAAGACAGAC 3207 47 100.0 29 ............................................... TTACTGGCTTTGACTATATAACTTTCTGG 3131 47 100.0 29 ............................................... TTTCCGTGTATCTGTAAGTATTCTATTAC 3055 47 100.0 30 ............................................... CTTCGCCTAATAGTAACCCTTTCACGTTTT 2978 47 100.0 30 ............................................... ATGACCAAGCATGGCCATGGAAGCTAACGA 2901 47 100.0 30 ............................................... AAGAGCGTCGAGAGGTATATGATGCTATTT 2824 47 100.0 30 ............................................... CTGACCCGTCCTGTTGTCTATCTTGTATGT 2747 47 100.0 30 ............................................... AGCGTTCTGTTTTTCGATACTGACATGTTT 2670 47 100.0 30 ............................................... GGAATTAGCAGACGTTAGAGAACTTGAAGG 2593 47 100.0 29 ............................................... TGTGGTGGGCGAGGCAAAGCTGCCTTCAC 2517 47 100.0 29 ............................................... CCATAGGAGGGGGTGTAGGGGGCAGCATA 2441 47 100.0 29 ............................................... TGAATGTAACGGCAAACGAGCCTTACGGA 2365 47 100.0 29 ............................................... ATATAGCATATCCCAATAGAGTTTTGATT 2289 47 100.0 30 ............................................... TTGCCTTCTCTGTCATAGTCAACAGCACTA 2212 47 100.0 30 ............................................... TAGAAAGCATCTGATAATTTCCAATCGAAT 2135 47 100.0 30 ............................................... TTTTCAGCCTGAGTTTCAAGATCTTGGTTA 2058 47 100.0 30 ............................................... TCCTGAATAAAGCCTCCTTATCAGACGCGT 1981 47 100.0 30 ............................................... CTATCAGGGTTGACAACGCCAGTAAAGAAC 1904 47 100.0 30 ............................................... CTACTCGTGATAGTTTTCTTGGATTCCATC 1827 47 100.0 30 ............................................... TTTATCATCCACTATATCTCCGGAATAGCA 1750 47 100.0 30 ............................................... CCAGAAGTGATTCGCTTCGTTAGGAAGAAC 1673 47 100.0 30 ............................................... CACGTTGACAAAGGATAAAAGCGTGGTTTT 1596 47 100.0 30 ............................................... GATAATCTCATGTTAAAGACTTATTCTCTT 1519 47 100.0 29 ............................................... AACCTATACCGTACTTGTAATTGCGGTTG 1443 47 100.0 30 ............................................... ACAGCGCCAGAAAAACCAACGGAAAAAATT 1366 47 100.0 30 ............................................... AGAACAGAAATAATACTGATACCGACCGTA 1289 47 100.0 30 ............................................... GGACGTGGAAACGATAAGGATGATATTTGC 1212 47 100.0 30 ............................................... CTGACAACACTTCCCATTCTGCTGGTCTGT 1135 47 100.0 30 ............................................... AGAAGAAATCAAAGAAGAATCAGTGATAAA 1058 47 100.0 30 ............................................... CATCACCGGACAAAATTTTATTCAAAATCT 981 47 100.0 30 ............................................... TCATGCGTAACAGCGAACACGCTGTTGTAA 904 47 100.0 30 ............................................... TAAAAGATGATAATGAGGTCGCTTCGTGCG 827 47 76.6 0 ...........................GGGT....CCT..A.C.C.G | ========== ====== ====== ====== =============================================== ============================== ================== 33 47 99.3 30 GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Left flank : GTGTCTTGCTGTATAGGATAGTGACTGGATTGAACCGGCCTTTCCTGCAGATGTGCTGATGCCAGGCACTTATGGAGTTGCTGGCAGACACCGGGCGTGCTGACGGCCCGCACCATGCCATATATTGCCGGGAGGGGAGCCAACTTGCAGCTGGCGAAGAGCTGTGCCGGCAGAACTTATTTCATCAGGGGATTACTTTTCCGAAGACAATGTGGAATAGTCTGTTCAAAAGAGATTGCACAGGGGGATCATGCTGTTTGAGTTTTATCGGACAGCCTCCAATAAACATAAGTGCAGGAAACGGAGATGATTTATGGATTCGGCAAACGATCATCCCTTCGCAGCAAGCCTATACGCTCTACGCAGCAGCCAACTACGCATTCAACTGAAAGCCAACTACGCCATTCAACTGAAAGCCAGGAATAAATCTGTAAGGCAGCAGGCAAGACTGACCAAAAGTCAAAACACGAGTTTAGGTTTACAAAGTCGTCCGTTTGGTG # Right flank : TTGCAAACCTACTTCTCTTAAGCGCATAATTTCATAAGTATTTATTACCTTTGCATCATGAAGAGTGACCAACTATTACGTTGCATCTTTCCAGATGTACTTGCCGACTACTTTGATGTTGTCGATATTCAAGAGGGTGTTTCCCAGTTTGACTTTTGGCTTGACGAGCGTAACTTTATGGAAAAGTCAGACCATAAGTTAGGCACTGTAAGCAGTTATGGTTTTACCAGCGAGCGTGTAATTCAGGACTTTCCTCTTCGTGGCAAAGCCGTCTACCTCCATGTTCGCCGACGCAAGTGGCGTGACAGTTCCAACGGAGAGATATTTACTTATTCATATGATGACTTGACGGCTGAGGGCAGTAAACTATCCCCCGAGTTCGTTTCTTTTTTAAAAGAATAGAATTGAGTCCACTGCAGAGAGCATCGCAAGCAGGTGCGCACTATGGCGTAAATGGCAAGCAGTTATCCACACAGTACAAGGAACATTTCAGTGACTAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 9979-6627 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXRC010000038.1 Prevotella denticola strain SCHI0042.S.4 Contig_38_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 9978 47 100.0 30 ............................................... AACACCAGCATTCGCACGAGACACAGAGCC 9901 47 100.0 29 ............................................... AATCAAAGCTGCGAACCAATGGCAAGCAA 9825 47 100.0 29 ............................................... TTTCAAAACGAAAAACGAATAGCGTAGAC 9749 47 100.0 30 ............................................... ATGCAAAAAAAGAAAGGTAGCCTACAGGCA 9672 47 100.0 30 ............................................... AGACGCTCGGCAAGATGGGGGAGTACTGGC 9595 47 100.0 30 ............................................... GAGCAGCAGGAGTATTATACTCATTCATTT 9518 47 100.0 30 ............................................... TATTTGTGCAGAGTATGGACCTGGGTCGTT 9441 47 100.0 29 ............................................... TATCCTTATTCGTCTCTTTCAGGTGGTTA 9365 47 100.0 30 ............................................... TATAAACTCGATATGCTCTATTAATTCAGC 9288 47 100.0 30 ............................................... CGCACGTTATAAGCAAGTGGCAAAGGACTT 9211 47 100.0 30 ............................................... ATTTGTTATAGTTTCTCATCCTTTCGAGGA 9134 47 100.0 30 ............................................... AAAAAGAAGAATATATCAACATTAAAGAGT 9057 47 100.0 30 ............................................... ATATACCCTACATATACGACTTCGTTTAAG 8980 47 100.0 29 ............................................... AGTCTTTTGTCGGGTGTTGGTCTTTTTAT 8904 47 100.0 30 ............................................... CTCTTTGCGCTTAACTTCTTTATAAGGCTT 8827 47 100.0 30 ............................................... GACAACTAAGTAATAACCGGGAGGGGCAAG 8750 47 100.0 30 ............................................... GTTTTGCAAGATTTCTCCCGTAATCTCTTG 8673 47 100.0 30 ............................................... GCAGCTTGTAACAACTGCTCCTCTGTCTGC 8596 47 100.0 30 ............................................... TCATCTACTTTACGCTTTACCAATTCGGGC 8519 47 100.0 29 ............................................... TCGTGGAAAGGCAACAAAGCGACAACACC 8443 47 100.0 30 ............................................... TTGTTCGCTTCCAATGAAGCAACGGCGTAG 8366 47 100.0 30 ............................................... TGTTCGTAGATTTCCATTGCCCACTGCAAC 8289 47 100.0 30 ............................................... GTTGTGCGTGTGCTTCGCCGTGTTTTCCGA 8212 47 100.0 29 ............................................... AGAGCAGCAGCCTATCACATCCGTAGTCT 8136 47 100.0 30 ............................................... ATCTTCTTCTTGCTGTCCACGACGATGTCG 8059 47 100.0 30 ............................................... ATTAAGGCAAGACATTCAGACACTGAAAGA 7982 47 100.0 31 ............................................... TTTATCATCATAAAGGTTTATTGTAGCCTCT 7904 47 100.0 30 ............................................... TGGAAGACGGATTTTATCAGGAGCTGAAAT 7827 47 100.0 30 ............................................... GCAGAGGAGATAGACATCTGCCCCTGCTTC 7750 47 100.0 29 ............................................... CGGCAATCGGCGATATTGCGAACGCCTTT 7674 47 100.0 30 ............................................... TCTTCAATCTTTTTCAGCTCTTCGAAGATG 7597 47 100.0 29 ............................................... ATTAAAACGTTTTGTATACTTACACCCAC 7521 47 100.0 30 ............................................... TGGACAATTACTACAATGCGATGGATTCTA 7444 47 100.0 30 ............................................... CGCCGTCTTTTATCTCCATCCCTGCGCTTT 7367 47 100.0 30 ............................................... TATCCGTCAAAAGAGGGTGTTCGTGCTATT 7290 47 100.0 30 ............................................... TTTGATTCTGTAGTCCATGTTCCAGTTCGC 7213 47 100.0 30 ............................................... TCCGCTGTTACGCTGTCTAATGGATGTGTC 7136 47 100.0 30 ............................................... AACATCACTTTAAAACGAAAATCACCCGAT 7059 47 100.0 30 ............................................... ATATAATCACGCTTAAGTTTGGTTGGGGTA 6982 47 100.0 30 ............................................... GTCTGCTGCAGGTGTGCCTCTTCATCGTGT 6905 47 100.0 30 ............................................... ATCTGAAAACTGTTCAAGACCGACACGACC 6828 47 100.0 30 ............................................... TGTTCTCGGTGATGGTGAAAGTTTTGGTTT 6751 47 100.0 31 ............................................... TCGCTGTGGGGGTCTTAAAAAGACCCCCTAC 6673 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 44 47 100.0 30 GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Left flank : ATGTGTATAAGAGACAGTCAAGGATGCTGCAAGACTGAAGCTGGCTAAATGGTTCAATGAGGTTGAAGAGCTGGGAGTGGACAATTTCTACACGGTGATTGACACGTTTGAAAATCATTATCAAACCATACTCAATTTCTTTGTAAACAGAGCAACAAATGCAAATGCTGAGTCATTCAATGCCAAGGTTAAGGCATTCAGGGCACAGTTCAGAGGAGTCACAGATATTCCTTTCTTTTTATATAGGCTTATGAAATTGTGTGCTTAAGAGAAGTAGGTTTGCAACTGGGTTTTAGGACTGACCCTGTGTATCTTTGCAGTAGCAAGCACAATTGCAGTCTTGTACTCATTGTAACGAACCT # Right flank : TGAAAATAAGTATTGCTCTGATTCTCAGTTAGTAACATTGTCTTTGTGCAAAATAAAAACTGCAATCTAAAAGAGTCCTATTGGTAATGATAGGACTCTTTTTCTTTTAGAATAATTCAAGTTGCTGCCCAGGAGCGTTGGGTGTTTGTGCCTGTGCCCCACAAAAAAGCTCTATCTCACCAAACTGTTTGTCTGTAATAACCATAATGCAAACATTGCCAGAATTAGGCATAAAAGACTTTACTCGCTTCACATGTACATCCGCATTCTCTCTGCTTGCACAATGACGAACATAGATTGATAATTGAAACATAGTAAATCCATCTTTCATCAAATCTTTCCGGAAAATAGTATAAGCACGCTTTTCCTTGTTTGTATTAGTTGGAAGATCGAAAAAGACCATCACCCACATAACCCTATATTCGCTAAGTCGTTGCATCAAAGAAAAGAAGGATAAGAGATTTCACGAACTTCCCCATTATAGCACTTCGCAAGACTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //