Array 1 1168-707 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGC01000110.1 Ruminococcus sp. AF21-3 AF21-3.Scaf110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 1167 30 100.0 40 .............................. AAAATGTCGTTTACCATGATTTCTAATGTCATAATGGTAG 1097 30 100.0 42 .............................. GTTTGGGGATAGATTAATTATTCAGATTTTAAATTTTTAAAA 1025 30 96.7 49 A............................. CTTCAATGATATTTTCAATGAAGCATTTAAAACTTTCAGTATCATCGAG 946 30 100.0 43 .............................. ATACTCAGCCTCCAATTCCTCTGGATTAACATGCAAGATTACT 873 30 96.7 45 ....................A......... AATTTACTATGATAGCATAAGCTCCATCCAATTCCGATTTTCTGT 798 30 100.0 32 .............................. ATAAAAAGTGTTTTTGACTGAATTAAGAACAT Deletion [737] 736 30 90.0 0 C................A..........G. | ========== ====== ====== ====== ============================== ================================================= ================== 7 30 97.6 42 TGTTGTACCGTACCTAAGAGGAATTGACAC # Left flank : GTATGGTAACCCAGGGACTTGGATATTCAGGCAGAGCCGTTTTCTCCGGCGTAACAGAAATGATCGCCAGAACAGTTGTCTGTCTTGGATTTGTAGGCACTTTTGGCTTCACAGCCATCTGCTTTGCAGACCAGACTGCCTGGATCACAGCAACCTGCTATATTTTCCCGACATGCCTGTGGTGTATCCGAAAGTCTGCAAAAATGCTTGTCATCAATAAAAAGTCCGTCGACCTTTAAAACCAGTAAATACAAGGGTTTATGGGAATTGTAAAGGAAAGAAAATTACAGATTAGGATAGAAAAAAGCTGAAATATCACAAAAAAGACTGTCGACTTCAAATGAGAATTTTTTGATGTAGAAAAAGGTCTGGAAATACTGAATTATATGGAAATAATAAGTGTCAGGCAGGAAAATAGGTCGACGGACTTTTTGGAAGAAAAATAGTTGAATTTCTGAAAAAAATATAATACTATATTAATAATAGCAGGAAAAGACTGC # Right flank : ATGTCAATACCCAAAGTGAAAAACAAAGGTAATTTACCTAAATACGAGAGTCGTATCGTATCGCATATTTAAAGTAGTAATGAAAGGTTTAAAATATTTATAAAAGCATGTTTAAGAGATGGCATTTTGAGGACTTTTGTTTATGAGTAAGCAGCGAGTTAAATAGAGGGCATTCGTTTAGTTACAGGAGTATAATTGTGGAAGTTAGGATTGAAAATATTCTGTCTGATGAAAATCTGGCATTGGCAAGGGAATCTTTACAGGGAAAGCGAGATAGCTGTGGACTTGATGGAATCAAAATATCAATGTTTGATGATTATTGGAAAGTAAATGGGGATAAGATAAAGCAGGAAATTTACGTCGGGAAATATGTTCCCGGCGTTGTTAAGTTACACGAAATTGTTAACGTGAAACAAAAAAGACGCAGTATTTCATTGATGAATACGGTGGATCGTTTTATATATCGGACTCTTATGCAGGAGATGAGTCGTTTTGGAGAA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGTACCGTACCTAAGAGGAATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 33083-32896 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGC01000038.1 Ruminococcus sp. AF21-3 AF21-3.Scaf38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 33082 37 100.0 36 ..................................... CTGCAAACGCTTCTCTTGCTTCGGCTTCTGTTCTGT 33009 37 100.0 40 ..................................... ACTGCTGTTATATAGTCTTTGATTGTTTTTGCATTTTCAA 32932 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 3 37 100.0 38 GTAGAAATGGGAGTAAGCCCGTTGAGGGCATTGACAC # Left flank : ATTTTAACAGGTCCAGTGTTTACACCGTTGTCTGATGAACATATTTTTAAAAACTGTAAAGTGGTAGATGGGGTTGTTACATGGCTGGATGAAGAAATCGATTGTGCGCCTGAATATATGTACACAAATAGTTATGAGTATCCTTCTTTAAAGTCTGTAATCTGATTAAGAGAAATGTTCTTCCTGTGCTTTCCAGAATCTGACTCTATGAAGTACAACTAAAAAGGATAAAGCAGGGCTAAAAGATCTATAAAAGAATTATAAAATTGGAAATAGAGTGGAAAGAGAAGAAAAAAGCCAGAGAAAATTTGGCAGGAAATAATAGTGTAAGTTTATTGACAAAAGAGATAAGGGGACATATGATAATGGTGTATGAGCTGAAGGATTTTTAGACGAGCACTAAAAAAGCAGTAAAAATAGTAATTTACAGAAAATTCAGTTAATTACTTGTAAAAATAGCTCTCGGAAGCCAGTAAAATCAAGGGTTCCGAGAGGCTACC # Right flank : CTTGTCATGCAGCAGCATGCCAGGATGGGTAAAGCGGGATGCCATAAGAAAAGAAGAGATCCATATCTTACCAATATGTTGGCAGGAGGTGAATGGAAATGAGTTTGAAACCTCCGAAAAAAAGTGATATGGGAAAAAGTTGGATGAAGCCAAGACGGGATAAAAGTATTTTACTACGACCGGAATACCATCTGATTGTAACAGAAGGTACTGCAATCAGAAATTACCGCGAGGAGAAAATTTATGAAGAAGAGCAAAAAACTGGCTAAAATATCTACAGCGGTTATAGGAATATACCTGCTTTTTCTAGTTGTGATAGGTGTAAAAACCGCTCTCCTATGCCATGATTTTTCTAAAATCGGCATGATTGGAATAGATCTGTCAGCAGGGGCAAAAAATTTGGATGATTATATCAGCGGTTATGCCATGGTGCCGGGAGCATTTTTTACGCTGCTTGGAAGCAGTTTTGGCGGTGTCATCTTTTTCCTGCTGATATTTGC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGGGAGTAAGCCCGTTGAGGGCATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 665-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGC01000120.1 Ruminococcus sp. AF21-3 AF21-3.Scaf120, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 664 36 100.0 30 .................................... AGAAGTGCAACGGAGTTCTCACTGTGATAG 598 36 100.0 30 .................................... TGACCCTCCCCCTTTGTGCAGCATAACGCT 532 36 100.0 30 .................................... TAGCAGCTATTGGATATGGGGCGGATAACC 466 36 100.0 29 .................................... GATGCCAAGGATTTCTCCGCCCTTCAGGT 401 36 100.0 30 .................................... CGCGTATCGGAACTATCCCGTATCTGGCCA 335 36 100.0 30 .................................... ATATAAAAATAGTGTGTGTCATTTGTAATC 269 36 100.0 30 .................................... GGCAGATTCGAGCCGCAGGGCATCGGAATG 203 36 100.0 30 .................................... ATTACGATACATTCGATAACCGGATCATTG 137 36 100.0 30 .................................... GGACTGAGCGCGATTTCAGCTATGACATCA 71 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTTGAGAGTCTTGTTAATACAGAAGGATTTCAAAC # Left flank : AAAAAGGATTCTATCTCAGCTTTATAAAAATCTTTCAGAAAAAATATTGGAAGATCATTTTGAAGAATTTGCGACTGTGAATCAGAAGGTTATCCAGTTTATGGATAAGGTTACGAGCTCTTCCGAATATAATCTGACATATGATGTTGATTTTCAGGCAGCAGGTCTGATAAAATATTGTAATGTACATATGGATTCCTGTTATGATAATCTGACTGAAAAGTTTATAGACTATCTGAGAACCATGAAGCAGATCTGTAATGTTGATATTGTTTTTGTGTTGAATTTGAAGCAATATTTCAGTACCGAGGATCTGAGAGAAATCTATAAACACTGTTTTTATACGAAGATGTATCTGATTAATCTGGAAGGAGTAAAATCAGACTCCATCGAAAATGACAGATATGTTATTATAGATAAAGATCTTTGTGTGCTGGACCTTGTGTTTTAACAACCTTCTATCGCAAGAAGATAACGACTCGGTGAGAACCGGATTTGAG # Right flank : CAGGACATTGTACCCGCAGCAAATGAAAGCGGTTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTCTTGTTAATACAGAAGGATTTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 51-615 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGC01000157.1 Ruminococcus sp. AF21-3 AF21-3.Scaf157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 51 36 100.0 31 .................................... ACAAGGCTCAATAATAATGTGCTGATCGTCG 118 36 100.0 30 .................................... CGGAATCACCAGATACAGCCCTCTTGCAGA 184 36 100.0 30 .................................... CCGACGATGTTATCACAGCTCTGATTCCGC 250 36 97.2 30 ......................A............. TGTTGTGACCTGCTCCATGCAGATGCGATG 316 36 100.0 30 .................................... AGAAAGACTGGAAAAATGAAGAATACGACC 382 36 97.2 30 ...................................T TTGCAAAAGAAATTATAGATGTTGCGTGTA 448 36 100.0 30 .................................... AATGGAACCGCCAGAACGCCGCAAAAGCCA 514 36 100.0 30 .................................... GTGTGAAATATGGAGATAACAGCGGATGGA 580 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 99.4 30 GTTTGAGAGTCTTGTTAATACAGAAGGATTTCAAAC # Left flank : TACAGAAGGATTTTCAAACCTCATTGCCGACCTGGATTCCTTCTCCCGCAG # Right flank : CCAGATGAAGGCCTTGGTACAATTGGAAAGAATCACATTCAGAGCAGTTCTAATTCTTCTTCTCAGAACTGCTCTTTTTCTCTGCTCTGAATGTGATACTTTCCTAATGAATTATATCATGAGCGAAGATGGCAGTGTTGTTGGCCCTTACGGTGAGAATGAATCAAAACTGTTTCGAAATGTAACTGCAGCTGATGTAGGAATTACGGAGAATAAGGGAACTGTAAAATATTACGGTACAAATAATCAGGAATATATCGTAACCTATTCCAAAAGCATGGTGACGGGATGGTATACACTTGCTATGATTCCGGTTAATGTTTTCAGTAAGAATATTGATACAGATCTTACCAGGGCAATATTGATTCTGGTAACTATAGAAATTATTTTATCTGTAACTGCGGCTGTTCTTATTTCCAGAAAGATCGGGAAAAAAGTTTACAAACCGCTGCACATGATAGAGAAAACAGGCGAGGGTAATTTTAATGCAAGAATTGTAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTCTTGTTAATACAGAAGGATTTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 267-701 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGC01000171.1 Ruminococcus sp. AF21-3 AF21-3.Scaf171, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 267 29 100.0 34 ............................. GCTATAATCTGATAACCTAGCTGCCTAGTCTCAA 330 29 100.0 43 ............................. TAGACTGAGTAACTGGGATTTCATTCGGAGACTGGGTTTGCAA 402 29 100.0 35 ............................. AGGTAAACCTGGCTTTTCATCGTATTTCTGAGGAT 466 29 93.1 40 ...........T...........A..... CTGAAGGAATCATTTTATAAAGATTGTGTACGAGTGATAT 535 29 100.0 42 ............................. ATGTAATTTCCTTCTTTCTTATAATCGTATGGCATCAAAAAA 606 29 100.0 38 ............................. TAAATACTCATAGTATCTTACGTATGTTGATGTTAAAT 673 29 93.1 0 ..........................T.T | ========== ====== ====== ====== ============================= =========================================== ================== 7 29 98.0 39 GTTGTACCGTACCTAAGAGGAATTGACAC # Left flank : AAAACCAGTAACCATAAGGACTTGCGGGTGATGAAGAGGAAAGAAAAATACAGATTAGAACAGAAAAGTGCTGAAATCTTACAAAAAAGACTGTCGACCGAGAATGAGAACTTTTTTTAATCTGGTAAAAAGTCTGGAAATACTGAATTATATGGAAATAATAAGTGTCAGGCAGGAAAATAGGTCGACGGACTTTTTGGAAGAAAAATAGTTGAATTTCTGAAAAAAATATAATATTATATCAATAATAGTAGGAAAAGACTGCTG # Right flank : TGGGGTAGGACAATCATAGTTAATTATATAAGTAAGAAATATTTGAAAAAATGTTAAGAAGTCATTTTCTTACCCATATGTATAAGTGCAGCAGTAAAAAAGAATGCAGCATAGGACTTAAACTATATCTGTAAAGTGAAGTTTGAGACTTTTGCATATTGGAGGTTAGAAGAAATGAAGAAAAAGCAGAATGCAGATAAACTGAAAATATATAATGCGAGTCATGGAACAGAACGAAAATGGGTATTGGAAAAAGGAAATGTATGGACTCGACCTACTATGAGTATGGAATTAAAATCTCAATATCATAGAGAACGCAGTAAGAAAGAATTTAGAAAAAGGCTGGAAGAATACAAGAATTAAAAAAACTGCTTCAACAACACCTGCTAAAAGTGACATTGAAGCAGTAGTCATAAATCAGGAAGACTGTTTATTTGGGTTTAGTGCATCAACCCATTTCATGTAATACTTTAGTGAGAGAATGATGGCCTCCGGTTGAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTACCGTACCTAAGAGGAATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //