Array 1 465798-463910 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCGU01000002.1 Serratia marcescens strain 2880STDY5682818, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 465797 28 100.0 32 ............................ TGCTGCATCACGAAACGCCGCTGGTGTATTGG 465737 28 100.0 32 ............................ CGCGACGGTCGGCATACCGAACTTGTCCAGGA 465677 28 100.0 32 ............................ TGTTCGGCGGCTCGGCCGGTTTTGCGGTTGGC 465617 28 100.0 32 ............................ TGGCGGGTGAATACGCGCCGCGACTGCGGGGA 465557 28 100.0 32 ............................ AATCAGGGGGCAATAATGGCGACGATTGACCT 465497 28 100.0 32 ............................ ATTACGGCCTGCGTGATAAAGTCAGCCGGAAC 465437 28 100.0 32 ............................ TTTTCATAGTGGTTTCACAGTCCCTTGAATAG 465377 28 100.0 32 ............................ GACCGGAAGTGGGTAAGGTTCGCCTGCGTCAA 465317 28 100.0 32 ............................ AATAATTCAGCAATATCGAGCAGGGGGATTTT 465257 28 100.0 32 ............................ GAAATGCGTGAAAACCGTGGTGAGATTTTCGG 465197 28 100.0 32 ............................ TTACTGGATTATTAATCACCCCGTGGGCGTCC 465137 28 100.0 32 ............................ AATCAATTTTTATCTGAATCAGGACAAACAAT 465077 28 100.0 32 ............................ GGATGAATCGCGGCGTGATATTTCCAGATGAC 465017 28 100.0 32 ............................ TATTCCGAATGCGTTAAAGAGTTGCCCAAATA 464957 28 100.0 32 ............................ TGCAGGACATTGAGAAGGTTCGCGCGGCGAGC 464897 28 100.0 32 ............................ TTCTCATTTTTACCCTGTGCCTGCTGACTGCC 464837 28 96.4 32 ...........C................ GGTAAATCATCCCACTCGCACGTTCGCATATC 464777 28 96.4 32 ...........C................ TCGCCAGTCTTACCGCTGTGCTTGTACCACAG 464717 28 96.4 32 ...........C................ TTATTGAAAAGCCCGCGTTTCGCCGGCGGCTC 464657 28 96.4 32 ...........C................ GTCACCGGCAGGAACGGACGCGGGCGGATCAC 464597 28 96.4 32 ...........C................ AGGACGACCTGAACACGTTTGTGCAGCAAGTC 464537 28 96.4 32 ...........C................ GAGGATTTGGCCGTGTTTGAGCAGACGGTCAA 464477 28 96.4 32 ...........C................ TGTACCGCCGGTGCCGCCAACAGAGGCGACGC 464417 28 96.4 32 ...........C................ TGCGGGCGCAAAACGGCAATCAGATGAACCTG 464357 28 96.4 32 ...........C................ GTTGACCGCCGGTACTTTCACTGCTGGCCTGC 464297 28 96.4 32 ...........C................ ACGGGACTCATGGCTTCAACCAAGGGGGCCAG 464237 28 96.4 32 ...........C................ AGTGGCAAGCAATGCGCGCTAAACTTTCTGCT 464177 28 96.4 32 ...........C................ TAAATGGTGCCAATTCGCAAGTTTGTTACCTT 464117 28 96.4 32 ...........C................ TTGAATAATACGTTTAAGGATTAAAAGATGAA 464057 28 96.4 33 .............C.............. AATTTACGCAGCGGGTTGCCGACTTTGATTTTC 463996 28 96.4 32 ..G......................... CCGCGCTTCGATAGCGGCAAGTGTGGCACCAG 463936 27 82.1 0 T............C......T..-...T | ========== ====== ====== ====== ============================ ================================= ================== 32 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGCTGACGGCATTGGAGGGATTCGGCTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCCCATCCAGGCCGTACCTGCTGAGACGGCGTTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGCAGCGTTGAGCGTATACGCCGCAGGGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCAAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCTGCTTGTTCCTGAAACAGGGCCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCGCTGCTACGGTACCCTGGTTTTAACCCTTTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACTGAGGGATTTGCCTATTGTTCTTTAATAATCAGTTTGTTAGTGATTTTTTTTGTTCA # Right flank : AGGGGGGATAAAAATTTACCGACAGGTGTTAACCAGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAATGCCAGCGTCAGCTCCCCTTTTCCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGGGAGTGGGGGAGGTGTCGGTCATCGTACGCCGCTTTGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATCG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 475898-474279 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCGU01000002.1 Serratia marcescens strain 2880STDY5682818, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================== ================== 475897 28 100.0 32 ............................ TGGTGCAAATACAGCGAGTGTTGCGGTAGAGG 475837 28 100.0 32 ............................ GCCGGCATAAATCCACTGGCGCAGGCCGTCGC 475777 28 100.0 33 ............................ GCCAGGGCCTCGACCGCATCATGATCGGCTGGA 475716 28 100.0 32 ............................ GTCCGCATTGATTTTCCCGACGGCGCGGTCAT 475656 28 100.0 32 ............................ ATCACTAGCGCATCCAGATTGTGATAGTCGCC 475596 28 100.0 32 ............................ GAAAGCAAATACTGCTGAGTCGGGCCAGCCAG 475536 28 100.0 32 ............................ ACTTAGTGCTGGGTGGGTATGGTGCAAATGCT 475476 28 100.0 32 ............................ TGGTCACCGCCGGACAAGACGGCACGCCCCGT 475416 28 100.0 32 ............................ TATGACACCGACCGCAGCCGCGGCGTCAGCCA 475356 28 100.0 32 ............................ AACAAAACCTACCCGGCGAGAAAGCTGTACCC 475296 28 100.0 32 ............................ AGGCGCACGACAAGCGGGTTTAAAACGATGCG 475236 28 100.0 32 ............................ AGTGAAACCGATTGAAAAGTTTCACGCGAAAC 475176 28 100.0 32 ............................ GTTAGAATATTTGGTGTGAATAGATTGCATGG 475116 28 100.0 32 ............................ ACAAACTCAACCTTGCGCTGACGGGTGTTGCG 475056 28 100.0 32 ............................ AGCCACAACCCAAAATCGTTATCAAGCGCCAT 474996 28 100.0 33 ............................ CGCTGTAGTTCTGCCCATCAAATTTGACACCCT 474935 28 100.0 32 ............................ TTTTTCGCGGGATCATACAAATGCCAGTAAAT 474875 28 100.0 32 ............................ GGGAACGAAAGCACGCTGCAGGCCGCCGCCGA 474815 28 100.0 32 ............................ AAACTCATCGACAACGTTGGCAATTTCACGAA 474755 28 100.0 32 ............................ GGCACAAGAAGAGGTTTTTTGCCTTCTTTCCG 474695 28 100.0 33 ............................ ATGAGCGCTACAACAACCAGATAAGGATCTAAC 474634 28 100.0 32 ............................ AGCCTGATAATTTGTCCAAATCGCCACTAATC 474574 28 96.4 32 ...............A............ CCGGACAGGCCGGCGCAGATCCACAGTTCGTC 474514 28 100.0 32 ............................ GTTCGCGCAAACGGGAAATCGTGATGCAGCCT 474454 28 92.9 56 .........T...T.............. TAGCTGGCGGGTAGTGATTTCGCCGGTATCGGTGCACATGCGTTGGTAGTAGATGA 474370 28 92.9 33 ..T..A...................... CCGACTGCGGCTACGCCTTGTCGTGACCACTCC 474309 28 96.4 0 ....................A....... | G,A,A [474282,474286,474288] ========== ====== ====== ====== ============================ ======================================================== ================== 27 28 99.2 33 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCGGCCTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGAACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAACGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGTCAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTTGGCAATTCAGGTCATCTGTGGGGGCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCTCCCTAAAGTGCAGAAATGTCACCTTACCCCGTTCCTTTTTGCCGAACCCTTTTTTGAGTGTCACTTTTAATTTATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGGTAGATTCCGGCAGTGATCAATAAGTGGATGACTTTATTTTTCTGATTGATGAATATTGACTCGCTTGCAACGGATTTCCCAGAAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGATATGCATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTCTCCCCCTCTGAGTTAAAAACAATACTGCACTCGAAACGAGCCAATTTGTATTACCTGCAATATTGTCGCGTTCTAGTGAATGGCGGCCGTGTCGAATATGTCACGGATGAAGGAAAACAGTCTCTGTACTGGAATATCCCCATTGCCAACACCACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //